| HGNC Family | Non-coding RNAs |
| Name | microRNA 3689b |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNotably, none of the provided abstracts address MIR3689B itself. Instead, these studies converge on elucidating the function of active zone proteins—most prominently, the Rab3‐interacting molecules (RIMs) and their associated binding partners. Collectively, the works describe how RIM isoforms (e.g., RIM1α, RIM2α, and the newly identified RIM1β) serve as central scaffolds at presynaptic active zones. These molecules tether synaptic vesicles in close apposition to voltage‐gated Ca²⁺ channels and interact with proteins such as Rab3A, Munc13, and α‐liprins, thereby ensuring Ca²⁺‐triggered neurotransmitter release, vesicle priming, docking, and the regulation of release probability."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSeveral reports further document that RIM-dependent scaffolds are dynamically regulated through post-translational modifications such as phosphorylation and ubiquitination, as well as through interactions with additional proteins (for example, Rab3A, synaptotagmin-1, RIM-binding proteins, and Munc13 isoforms) that adjust the efficacy of both short-term and long-term synaptic plasticity. This modulation influences Ca²⁺ channel density, the coupling between Ca²⁺ influx and vesicle release, and ultimately affects synaptic strength as well as features of synaptic plasticity relevant for learning, memory, and behavior—including models of schizophrenia, epileptogenesis, and motor control."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies extend these findings by highlighting roles for RIM proteins in the establishment and maintenance of precise synaptic architecture and active zone organization throughout diverse brain regions. These investigations reveal that proper presynaptic organization controls not only fast vesicle release but also supports broader functions—including postsynaptic receptor trafficking, circuit refinement during development, and the balance between goal-directed and habitual behaviors. Overall, while the combined literature robustly details the molecular mechanisms governing presynaptic vesicle priming, Ca²⁺-channel recruitment, and plasticity via RIM-dependent pathways"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "17", "end_ref": "27"}]}, {"type": "t", "text": "—none of these works shed light on MIR3689B. Thus, while our understanding of presynaptic mechanisms has advanced considerably through the study of RIM-mediated processes, the function of MIR3689B remains to be characterized.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Susanne Schoch, Pablo E Castillo, Tobias Jo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RIM1alpha forms a protein scaffold for regulating neurotransmitter release at the active zone."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/415321a"}], "href": "https://doi.org/10.1038/415321a"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11797009"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11797009"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Pablo E Castillo, Susanne Schoch, Frank Schmitz, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The presynaptic active zone protein RIM1alpha is critical for normal learning and memory."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0896-6273(04)00146-1"}], "href": "https://doi.org/10.1016/s0896-6273(04"}, {"type": "t", "text": "00146-1) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15066271"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15066271"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yaisa S Andrews-Zwilling, Hiroshi Kawabe, Kerstin Reim, et al. 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| Synonyms | MIR-3689B |
| NCBI Gene ID | 100500906 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3689B has 245 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for MIR3689B from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689B gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3689B gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3689B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR3689B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |