| HGNC Family | Non-coding RNAs |
| Name | microRNA 3689c |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nStudies of acyl‐CoA thioesterases in energy‐metabolizing tissues reveal that proteins such as BFIT, identified in brown adipose tissue (BAT), are acutely responsive to thermal stress. In one study, a novel, temperature‐responsive gene—robustly expressed in BAT—was shown to be induced by cold exposure and suppressed upon warm acclimation. The full‐length murine gene (and its human splice variant, hBFIT2) encodes a protein bearing two acyl‐CoA thioesterase domains that is postulated to facilitate the transition of BAT toward higher metabolic activity by modulating intracellular fatty acyl-CoA levels, potentially in relationship with obesity traits."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary work has demonstrated that in the liver, a related thioesterase—Them1—regulates hepatocellular fatty acid trafficking. When expressed exclusively in hepatic tissue, Them1 was found to enhance fatty acid oxidation rates while diminishing very low-density lipoprotein (VLDL) triglyceride secretion. In the context of high-fat feeding, altered Them1 expression was linked to increased hepatic steatosis and augmented gluconeogenesis mediated by PPARα activation, underscoring its role in balancing lipid handling and glucose metabolism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther insights into Them1’s function in BAT have revealed a dynamic intracellular regulation mechanism. Under basal conditions, Them1 aggregates into biomolecular condensates localized near lipid droplets and mitochondria, where it limits fatty acid oxidation and thermogenesis. However, upon β-adrenergic stimulation, phosphorylation at the N-terminus disrupts these puncta, allowing Them1 to adopt a diffuse distribution that relieves its suppressive effect. This stimulus-coupled reorganization finely tunes thermogenesis and energy expenditure during periods of increased energy demand."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "S H Adams, C Chui, S L Schilbach, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BFIT, a unique acyl-CoA thioesterase induced in thermogenic brown adipose tissue: cloning, organization of the human gene and assessment of a potential link to obesity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/bj3600135"}], "href": "https://doi.org/10.1042/bj3600135"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11696000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11696000"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Anal Desai, Michele Alves-Bezerra, Yingxia Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of fatty acid trafficking in liver by thioesterase superfamily member 1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M081455"}], "href": "https://doi.org/10.1194/jlr.M081455"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29208699"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29208699"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yue Li, Norihiro Imai, Hayley T Nicholls, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Thioesterase superfamily member 1 undergoes stimulus-coupled conformational reorganization to regulate metabolism in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-021-23595-x"}], "href": "https://doi.org/10.1038/s41467-021-23595-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34108467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34108467"}]}]}]}
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| NCBI Gene ID | 100616333 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3689C has 243 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for MIR3689C from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689C gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689C gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3689C gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3689C gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689C gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689C gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |