| HGNC Family | Non-coding RNAs |
| Name | microRNA 3689d-1 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided abstracts focus on the multifaceted roles of BAZ1B (also known as WSTF) in diverse cellular processes such as DNA damage repair, chromatin remodeling, and developmental regulation. Notably, the study in abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "demonstrates that BAZ1B has intrinsic tyrosine kinase activity, directly phosphorylating H2A.X at Tyr142 during the double-strand DNA break response—a key event that influences subsequent repair and chromatin reorganization. Although MIR3689D1 is not explicitly mentioned in these studies, its potential involvement might be envisioned in the broader regulatory networks modulating DNA damage responses and chromatin dynamics."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn another study, the upregulation of BAZ1B in the nucleus accumbens was shown to potentiate proreward behaviors such as enhanced cocaine self-administration and resilience to chronic social defeat stress."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Here, the chromatin remodeling functions of BAZ1B and its associated partners appear critical for reprogramming gene expression in response to distinct emotional stimuli. While MIR3689D1’s function remains uncharacterized in this context, one could speculate that if involved, it might fine-tune gene expression in these reward pathways through post‐transcriptional mechanisms."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional work in murine models highlights that reduced dosage of BAZ1B contributes to growth retardation, gastrointestinal abnormalities, and increased early mortality."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " These findings underscore the gene’s importance in normal development and survival, suggesting that subtle regulatory inputs—potentially including those mediated by noncoding RNAs like MIR3689D1—could influence the penetrance or variability of these phenotypes."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther investigation with Baz1b knockdown models confirmed that diminished Baz1b expression results in not only growth deficits but also cardiac abnormalities, including dilated cardiomyopathy, which likely contribute to the observed early lethality."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Although the current abstracts do not address MIR3689D1 directly, understanding its function is an intriguing area for future research, particularly in light of its similarity in regulatory potential to factors controlling chromatin structure and gene expression in stress, repair, and developmental pathways.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Andrew Xiao, Haitao Li, David Shechter, et al. "}, {"type": "b", "children": [{"type": "t", "text": "WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature07668"}], "href": "https://doi.org/10.1038/nature07668"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19092802"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19092802"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "HaoSheng Sun, Jennifer A Martin, Craig T Werner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BAZ1B in Nucleus Accumbens Regulates Reward-Related Behaviors in Response to Distinct Emotional Stimuli."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.3254-15.2016"}], "href": "https://doi.org/10.1523/JNEUROSCI.3254-15.2016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27053203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27053203"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Christopher Pai, Basil A McIntosh, Russell H Knutsen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Baz1b in mice causes perinatal lethality, growth failure, and variable multi-system outcomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2023.09.007"}], "href": "https://doi.org/10.1016/j.ydbio.2023.09.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37827362"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37827362"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Basil McIntosh, Russell Knutsen, Mark Levin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Baz1b Dosage Influences Cardiovascular Function, Predisposing to Dilated Cardiomyopathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fasebj.2022.36.S1.R2293"}], "href": "https://doi.org/10.1096/fasebj.2022.36.S1.R2293"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35723872"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35723872"}]}]}]}
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| NCBI Gene ID | 100616131 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR3689D1 has 237 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for MIR3689D1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689D1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689D1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3689D1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR3689D1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR3689D1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR3689D1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |