MIR3928 Gene

HGNC Family Non-coding RNAs
Name microRNA 3928
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMiR-3928 is increasingly recognized as an important microRNA in cancer biology. In the broader context of microRNAs serving as diagnostic biomarkers for head and neck squamous cell carcinoma, many studies assess the potential of these non-coding RNAs to regulate key cellular processes such as differentiation, proliferation, and apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn response to exogenous stress, such as ionizing radiation, miR-3928 plays a critical regulatory role. Experimental evidence shows that exposure to X-rays causes an early increase in miR-3928 expression, which directly binds to the 3′-untranslated region of Dicer mRNA, leading to a suppression of Dicer expression. This modulation impedes the maturation of other microRNAs and triggers DNA damage signals, including ATR activation, Chk1 phosphorylation, and subsequent G1 cell cycle arrest."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther studies have linked miR-3928-3p to oncogenic processes in lung squamous cell carcinoma. Here, copy number gains are associated with its upregulation, and its elevated expression correlates significantly with poor patient prognosis. Mechanistically, miR-3928-3p enhances tumorigenesis by inhibiting FAM46C, which in turn leads to increased MYC expression and promotes cell proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast, investigations in glioblastoma reveal a tumor suppressor role for miR-3928. Lower endogenous levels of miR-3928 in glioblastoma tissues and cell lines compared to normal brain tissue suggest its importance in maintaining cellular homeostasis. Overexpression experiments demonstrate that miR-3928 can reduce cell growth and invasiveness in vitro, as well as tumor size in vivo, by targeting several oncogenes—including MDM2, CD44, and CCND1—and by indirectly facilitating the activation of wild-type p53."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rushdi S Fadhil, Ming Q Wei, Dimitrios Nikolarakos, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Salivary microRNA miR-let-7a-5p and miR-3928 could be used as potential diagnostic bio-markers for head and neck squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0221779"}], "href": "https://doi.org/10.1371/journal.pone.0221779"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32208417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32208417"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lei Chang, Wentao Hu, Caiyong Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-3928 activates ATR pathway by targeting Dicer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/rna.21821"}], "href": "https://doi.org/10.4161/rna.21821"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22922797"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22922797"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Endi Xia, Sotaro Kanematsu, Yusuke Suenaga, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA induction by copy number gain is associated with poor outcome in squamous cell carcinoma of the lung."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-33696-1"}], "href": "https://doi.org/10.1038/s41598-018-33696-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30337605"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30337605"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Elizabeth Q X Mulcahy, Ying Zhang, Rossymar R Colόn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA 3928 Suppresses Glioblastoma through Downregulation of Several Oncogenes and Upregulation of p53."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms23073930"}], "href": "https://doi.org/10.3390/ijms23073930"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35409289"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35409289"}]}]}]}
Synonyms MIR-3928
NCBI Gene ID 100500901
API
Download Associations
Predicted Functions View MIR3928's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR3928's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR3928's ARCHS4 Predicted Functions.

Functional Associations

MIR3928 has 1,043 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for MIR3928 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3928 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3928 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR3928 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR3928 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR3928 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR3928 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR3928 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR3928 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of MIR3928 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR3928 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.