MIR4298 Gene

HGNC Family Non-coding RNAs
Name microRNA 4298
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn the first study"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", the authors describe the pivotal role of Snai1 in regulating endothelial‐to‐mesenchymal transformation during cardiac valve development. Here, Snai1 not only promotes mesenchymal cell migration and invasion but also directly drives expression of the matrix metalloproteinase MMP15, a key effector of extracellular matrix remodeling. Although MIR4298 is not mentioned in this work, by analogy to other microRNAs known to modulate gene expression post‐transcriptionally, one might speculate that if MIR4298 were expressed in this context, it could serve to fine‐tune the levels of MMP15—or related targets—to achieve the precise regulation required during valve morphogenesis.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the second study"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", the focus shifts to mammary gland development where MMP15, along with MMP14, is shown to influence adipocyte differentiation rather than branching morphogenesis per se. Here, MMP15 appears to regulate the formation of thermogenic brown fat within the gland, hinting at a broader role for proteolytic enzymes in metabolic as well as morphogenetic processes. If MIR4298 were active in this setting, its putative function—as seen with many microRNAs in developmental systems—could involve the modulation of MMP15 expression, thereby indirectly affecting the balance of adipocyte cell-fates during the ductal invasion process.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while neither abstract directly addresses MIR4298, the developmental contexts described—cardiac valve formation and mammary gland adipocyte differentiation—involve tightly regulated extracellular matrix remodeling pathways in which MMP15 plays a central role. On the basis of established roles for microRNAs in fine-tuning gene expression during morphogenesis, it is plausible that MIR4298, if expressed in these systems, would function as a regulatory modulator of key proteases such as MMP15. Further experimental investigation would be required to elucidate whether MIR4298 indeed participates in these developmental signaling networks.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ge Tao, Agata K Levay, Thomas Gridley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mmp15 is a direct target of Snai1 during endothelial to mesenchymal transformation and endocardial cushion development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2011.08.022"}], "href": "https://doi.org/10.1016/j.ydbio.2011.08.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21920357"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21920357"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tamar Y Feinberg, R Grant Rowe, Thomas L Saunders, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional roles of MMP14 and MMP15 in early postnatal mammary gland development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.136259"}], "href": "https://doi.org/10.1242/dev.136259"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27633994"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27633994"}]}]}]}
NCBI Gene ID 100423021
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Predicted Functions View MIR4298's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR4298's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR4298's ARCHS4 Predicted Functions.

Functional Associations

MIR4298 has 236 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for MIR4298 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4298 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4298 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR4298 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4298 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4298 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR4298 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR4298 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4298 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of MIR4298 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR4298 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4298 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.