| HGNC Family | Non-coding RNAs |
| Name | microRNA 4438 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nStudies across multiple vertebrate models have established that the homeobox transcription factor GBX2 is a central regulator of neural patterning. GBX2 helps define the midbrain–hindbrain boundary (MHB) by engaging in mutually exclusive interactions with OTX2. This cross‐regulatory mechanism is essential for specifying hindbrain identity and for proper organizer activity, as abnormal expression of FGF8 and subsequent cerebellar and midbrain defects arise when GBX2 function is compromised."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": " Moreover, molecular analyses reveal that GBX2 recruits corepressor complexes—via interactions with Groucho/TLE proteins—to silence OTX2 and help refine the expression domains of organizer genes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGBX2 also plays a vital role in organizing structures that arise from neural crest cells and adjacent tissues. It mediates proper pharyngeal arch artery formation by relaying directional cues from the pharyngeal ectoderm to migrating cardiac neural crest cells and by modulating key guidance pathways such as Slit/Robo."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": " In addition, GBX2 is required for normal inner ear development where it promotes dorsal structures like the semicircular canals by positively regulating genes including Wnt2b and Dlx5, while also influencing ventral fates via the restriction of OTX2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the forebrain, dynamically regulated GBX2 expression coordinates regional cell specification within the thalamus and supports the segregation of neuronal identities. GBX2 helps delineate sharp compartment boundaries in the diencephalon and represses habenular traits via both autonomous and non‐autonomous feedback mechanisms."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "12"}]}, {"type": "t", "text": " Within the medial ganglionic eminence, its temporally restricted expression is crucial for the proper migration and differentiation of progenitors into distinct neuronal lineages, such as striatal cholinergic interneurons."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " In parallel, GBX2 functions downstream of LIF/STAT3 signaling to support the maintenance of naïve pluripotency by directly targeting factors like KLF4, thereby enhancing the reprogramming of somatic cells into embryonic stem cell–like states."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies have broadened the known repertoire of GBX2 functions. It influences spinal cord development"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": "and marks distinct retinal amacrine cell subtypes with unique connectivity and physiological properties."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": " Finally, disrupted GBX2 regulation has been linked to human developmental disorders such as CHARGE syndrome, where altered GBX2 and OTX2 interactions lead to aberrant FGF8 signaling and cerebellar vermis hypoplasia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": " Collectively, these findings underscore the integrated role of GBX2 in orchestrating neural regionalization, cell migration, fate specification, and stem cell maintenance, thus providing critical insights into both normal development and disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "13"}, {"type": "fg_f", "ref": "8"}, {"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ying Su, Anming Meng "}, {"type": "b", "children": [{"type": "t", "text": "The expression of gbx-2 during zebrafish embryogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mech Dev (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0925-4773(02)00011-4"}], "href": "https://doi.org/10.1016/s0925-4773(02"}, {"type": "t", "text": "00011-4) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11900984"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11900984"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "James Y H Li, Zhimin Lao, Alexandra L Joyner "}, {"type": "b", "children": [{"type": "t", "text": "Changing requirements for Gbx2 in development of the cerebellum and maintenance of the mid/hindbrain organizer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0896-6273(02)00935-2"}], "href": "https://doi.org/10.1016/s0896-6273(02"}, {"type": "t", "text": "00935-2) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12367504"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12367504"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "James Y H Li, Zhimin Lao, Alexandra L Joyner "}, {"type": "b", "children": [{"type": "t", "text": "New regulatory interactions and cellular responses in the isthmic organizer region revealed by altering Gbx2 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01727"}], "href": "https://doi.org/10.1242/dev.01727"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15790971"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15790971"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "N Abimbola Sunmonu, Li Chen, James Y H Li "}, {"type": "b", "children": [{"type": "t", "text": "Misexpression of Gbx2 throughout the mesencephalon by a conditional gain-of-function transgene leads to deletion of the midbrain and cerebellum in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genesis (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvg.20546"}], "href": "https://doi.org/10.1002/dvg.20546"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19603509"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19603509"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wei Lin, Naihe Jing, M Albert Basson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Synergistic activity of Sef and Sprouty proteins in regulating the expression of Gbx2 in the mid-hindbrain region."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genesis (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gene.20103"}], "href": "https://doi.org/10.1002/gene.20103"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15729686"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15729686"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Amélie Calmont, Sarah Ivins, Kelly Lammerts Van Bueren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tbx1 controls cardiac neural crest cell migration during arch artery development by regulating Gbx2 expression in the pharyngeal ectoderm."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.028902"}], "href": "https://doi.org/10.1242/dev.028902"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19700621"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19700621"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Noah A Byrd, Erik N Meyers "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Gbx2 results in neural crest cell patterning and pharyngeal arch artery defects in the mouse embryo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2005.05.023"}], "href": "https://doi.org/10.1016/j.ydbio.2005.05.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15996652"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15996652"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "David A Roeseler, Shrikesh Sachdev, Desire M Buckley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elongation factor 1 alpha1 and genes associated with Usher syndromes are downstream targets of GBX2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0047366"}], "href": "https://doi.org/10.1371/journal.pone.0047366"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23144817"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23144817"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zhengshi Lin, Raquel Cantos, Maria Patente, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2 is required for the morphogenesis of the mouse inner ear: a downstream candidate of hindbrain signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01804"}], "href": "https://doi.org/10.1242/dev.01804"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15829521"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15829521"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Li Chen, Qiuxia Guo, James Y H Li "}, {"type": "b", "children": [{"type": "t", "text": "Transcription factor Gbx2 acts cell-nonautonomously to regulate the formation of lineage-restriction boundaries of the thalamus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.030510"}], "href": "https://doi.org/10.1242/dev.030510"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19279136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19279136"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Jessica Burroughs-Garcia, Vinoth Sittaramane, Anand Chandrasekhar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Evolutionarily conserved function of Gbx2 in anterior hindbrain development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Dyn (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvdy.22589"}], "href": "https://doi.org/10.1002/dvdy.22589"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21360792"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21360792"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Kairong Li, Jiaqing Zhang, James Y H Li "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2 plays an essential but transient role in the formation of thalamic nuclei."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0047111"}], "href": "https://doi.org/10.1371/journal.pone.0047111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23056596"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23056596"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Thomas Heimbucher, Christina Murko, Baubak Bajoghli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2 and Otx2 interact with the WD40 domain of Groucho/Tle corepressors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00811-06"}], "href": "https://doi.org/10.1128/MCB.00811-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17060451"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17060451"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "N Abimbola Sunmonu, Kairong Li, Qiuxia Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2 and Fgf8 are sequentially required for formation of the midbrain-hindbrain compartment boundary."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.055665"}], "href": "https://doi.org/10.1242/dev.055665"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21266408"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21266408"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Chih-I Tai, Qi-Long Ying "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2, a LIF/Stat3 target, promotes reprogramming to and retention of the pluripotent ground state."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.118273"}], "href": "https://doi.org/10.1242/jcs.118273"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23345404"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23345404"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Manman Wang, Ling Tang, Dahai Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcription factor Gbx2 induces expression of Kruppel-like factor 4 to maintain and induce naïve pluripotency of embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M117.803254"}], "href": "https://doi.org/10.1074/jbc.M117.803254"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28848051"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28848051"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Brian Luu, Debra Ellisor, Mark Zervas "}, {"type": "b", "children": [{"type": "t", "text": "The lineage contribution and role of Gbx2 in spinal cord development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0020940"}], "href": "https://doi.org/10.1371/journal.pone.0020940"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21698205"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21698205"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Patrick C Kerstein, Joseph Leffler, Benjamin Sivyer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gbx2 Identifies Two Amacrine Cell Subtypes with Distinct Molecular, Morphological, and Physiological Properties."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2020.108382"}], "href": "https://doi.org/10.1016/j.celrep.2020.108382"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33207201"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33207201"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Tian Yu, Linda C Meiners, Katrin Danielsen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deregulated FGF and homeotic gene expression underlies cerebellar vermis hypoplasia in CHARGE syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.01305"}], "href": "https://doi.org/10.7554/eLife.01305"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24368733"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24368733"}]}]}]}
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| NCBI Gene ID | 100616375 |
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| Predicted Functions |
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| Expression in Tissues and Cell Lines |
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MIR4438 has 100 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.
Click the + buttons to view associations for MIR4438 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4438 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |