MIR4480 Gene

HGNC Family Non-coding RNAs
Name microRNA 4480
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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These reports demonstrate that DKK4 is expressed within developing placodes and is subject to feedback regulation by Wnt activity, ensuring proper patterning and morphogenesis during development."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther investigations have extended the functional repertoire of DKK4 beyond ectodermal patterning. In congenital conditions such as anorectal malformations, rare copy number variations in DKK4 have been implicated in disrupting anorectal development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Additionally, studies in osteoblast-like cells show that DKK4 suppresses bone formation by inhibiting Wnt/β‐catenin activity, while in the context of hair follicle subtypes, differential regulation by DKK4 delineates pathways for primary (Eda-dependent) versus secondary (Eda-independent) hair development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}, {"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In colorectal cancer, DKK4 has been found to be upregulated and to restrict metastatic behavior by engaging a negative feedback loop involving Wnt and AKT signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to these multifaceted roles of DKK4 in developmental and oncogenic signaling, emerging evidence points to a distinct function for microRNA miR-4480. Specifically, serum profiling in patients with advanced breast cancer has identified miR-4480 as a promising biomarker capable of discriminating between patients with and without brain metastasis, achieving an area under the receiver operating characteristic curve of approximately 0.78. This finding underscores the potential of miR-4480 as a noninvasive diagnostic tool for predicting brain metastasis in breast cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hisham Bazzi, Katherine A Fantauzzo, Gavin D Richardson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Wnt inhibitor, Dickkopf 4, is induced by canonical Wnt signaling during ectodermal appendage morphogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2007.02.035"}], "href": "https://doi.org/10.1016/j.ydbio.2007.02.035"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17397822"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17397822"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ingrid Fliniaux, Marja L Mikkola, Sylvie Lefebvre, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of dkk4 as a target of Eda-A1/Edar pathway reveals an unexpected role of ectodysplasin as inhibitor of Wnt signalling in ectodermal placodes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2008.04.023"}], "href": "https://doi.org/10.1016/j.ydbio.2008.04.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18508042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18508042"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chang-Yi Cui, Makoto Kunisada, Yulan Piao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0010009"}], "href": "https://doi.org/10.1371/journal.pone.0010009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20386733"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20386733"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chang-Yi Cui, Mingzhu Yin, Jian Sima, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of Wnt, Eda and Shh at defined stages of sweat gland development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.109231"}], "href": "https://doi.org/10.1242/dev.109231"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25249463"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25249463"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jian Sima, Yulan Piao, Yaohui Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular dynamics of Dkk4 modulates Wnt action and regulates meibomian gland development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.143909"}], "href": "https://doi.org/10.1242/dev.143909"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27864382"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27864382"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Emily H M Wong, Long Cui, Chun-Laam Ng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide copy number variation study in anorectal malformations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/dds451"}], "href": "https://doi.org/10.1093/hmg/dds451"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23108157"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23108157"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Shiro Hiramitsu, Masakazu Terauchi, Toshiro Kubota "}, {"type": "b", "children": [{"type": "t", "text": "The effects of Dickkopf-4 on the proliferation, differentiation, and apoptosis of osteoblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2013-1387"}], "href": "https://doi.org/10.1210/en.2013-1387"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24105477"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24105477"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Junrong Liang, Lina Sun, Yujun Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Wnt signaling modulator DKK4 inhibits colorectal cancer metastasis through an AKT/Wnt/β-catenin negative feedback pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jbc.2022.102545"}], "href": "https://doi.org/10.1016/j.jbc.2022.102545"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36181792"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36181792"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jun Sato, Akihiko Shimomura, Junpei Kawauchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Brain metastasis-related microRNAs in patients with advanced breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0221538"}], "href": "https://doi.org/10.1371/journal.pone.0221538"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31603918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31603918"}]}]}]}
NCBI Gene ID 100616151
API
Download Associations
Predicted Functions View MIR4480's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR4480's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR4480's ARCHS4 Predicted Functions.

Functional Associations

MIR4480 has 228 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for MIR4480 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4480 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4480 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4480 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4480 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR4480 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4480 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR4480 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4480 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.