MIR4635 Gene

HGNC Family Non-coding RNAs
Name microRNA 4635
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided studies directly mention MIR4635, the insights they offer into CD1‐mediated lipid antigen presentation and T cell receptor (TCR) adaptability may furnish a conceptual framework for investigating how microRNAs such as MIR4635 could regulate these immunological processes. For instance, one study demonstrated that the invariant Valpha14Jalpha18 TCR can assume alternative conformations to accommodate the diverse structures of self and foreign glycolipids when presented by CD1d, thereby facilitating effective NKT cell activation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary investigations in murine systems have shown that proper cell surface expression of CD1 isoforms is maintained independently of endogenous glycosphingolipid synthesis, and that genetic variation—as seen with a novel Cd1d2 allele—does not preclude normal expression patterns."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " These findings help define the baseline requirements for antigen presentation, a process that could be fine‐tuned by regulatory elements including microRNAs.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther, studies utilizing double transgenic mouse models revealed that CD1b-autoreactive T cells exhibit an innate-like, activated phenotype—capable of rapid proinflammatory cytokine secretion and contribution to early anti-microbial immunity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, comparative analyses between mouse strains have underscored that intrinsic factors, including the strength of CD1d-mediated TCR signals, play a critical role in dictating the differentiation and subset distribution of NKT cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Although these reports do not address MIR4635, the complex regulation of antigen presentation and T cell activation they describe suggests that future studies should assess whether MIR4635 participates in refining these key immune pathways.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Dirk M Zajonc, Paul B Savage, Albert Bendelac, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystal structures of mouse CD1d-iGb3 complex and its cognate Valpha14 T cell receptor suggest a model for dual recognition of foreign and self glycolipids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmb.2008.01.061"}], "href": "https://doi.org/10.1016/j.jmb.2008.01.061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18295796"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18295796"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Vania Manolova, Yoshio Hirabayashi, Lucia Mori, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CD1a and CD1b surface expression is independent from de novo synthesized glycosphingolipids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Immunol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/immu.200390004"}], "href": "https://doi.org/10.1002/immu.200390004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12594829"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12594829"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "B Gozalbo-López, A Pérez-Rosado, J F Parra-Cuadrado, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a new mouse Cd1d2 allele."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Immunogenet (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1365-2370.2004.00431.x"}], "href": "https://doi.org/10.1111/j.1365-2370.2004.00431.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15009173"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15009173"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sha Li, Hak-Jong Choi, Kyrie Felio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Autoreactive CD1b-restricted T cells: a new innate-like T-cell population that contributes to immunity against infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2011-03-341941"}], "href": "https://doi.org/10.1182/blood-2011-03-341941"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21860021"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21860021"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ludivine Amable, Luis Antonio Ferreira Martins, Remi Pierre, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Intrinsic factors and CD1d1 but not CD1d2 expression levels control invariant natural killer T cell subset differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-023-43424-7"}], "href": "https://doi.org/10.1038/s41467-023-43424-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38040679"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38040679"}]}]}]}
NCBI Gene ID 100616479
API
Download Associations
Predicted Functions View MIR4635's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR4635's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR4635's ARCHS4 Predicted Functions.

Functional Associations

MIR4635 has 231 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for MIR4635 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4635 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4635 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR4635 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4635 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4635 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4635 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR4635 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of MIR4635 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4635 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR4635 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of MIR4635 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4635 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.