MIR4653 Gene

HGNC Family Non-coding RNAs
Name microRNA 4653
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nmiR-4653-3p plays a pivotal role in the progression of pancreatic ductal adenocarcinoma (PDAC). Its expression is undetectable in the normal pancreatic duct but steadily increases from low-grade to high-grade pancreatic intraepithelial neoplasia (PanIN) and finally to PDAC, demonstrating a clear association with the neoplastic transformation and aggressiveness of the tumor. This progressive upregulation correlates with advanced pathological T stages, lymph node metastasis, and other markers of invasive disease, ultimately linking miR-4653-3p expression with poorer overall and disease-specific survival outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "At the molecular level, miR-4653-3p exerts its oncogenic effect at least partly by targeting Homeodomain Interacting Protein Kinase 2 (HIPK2). Experimental evidence in MIA PaCa-2 cells shows that miR-4653-3p downregulates HIPK2 expression, a regulatory protein whose diminished presence is observed in the progression from normal tissue through PanIN to full-blown PDAC. The decreased HIPK2 levels further correlate with more aggressive tumor features such as perineural invasion and venous involvement, underscoring the functional impact of miR-4653-3p on tumor biology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Collectively, these findings highlight miR-4653-3p as a key molecular player in PDAC tumorigenesis. By suppressing HIPK2, miR-4653-3p contributes to a more aggressive tumor phenotype and serves as a potential prognostic biomarker. Its precise role in the neoplastic cascade also suggests that targeting miR-4653-3p or restoring HIPK2 function could represent innovative therapeutic strategies for managing PDAC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kenichi Hirabayashi, Masaki Miyazawa, Yumi Takanashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-4653-3p overexpression is associated with a poor prognosis of pancreatic ductal adenocarcinoma via HIPK2 downregulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-022-22950-2"}], "href": "https://doi.org/10.1038/s41598-022-22950-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36289359"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36289359"}]}]}]}
NCBI Gene ID 100616117
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Predicted Functions View MIR4653's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR4653's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR4653's ARCHS4 Predicted Functions.

Functional Associations

MIR4653 has 449 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for MIR4653 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4653 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4653 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4653 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4653 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR4653 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of MIR4653 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4653 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of MIR4653 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR4653 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4653 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.