| HGNC Family | Non-coding RNAs |
| Name | microRNA 4655 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNEAT1 is a paradigmatic long noncoding RNA that forms an essential architectural scaffold for nuclear paraspeckle assembly. It organizes paraspeckle substructures via its highly ordered spatial domains and multiple isoforms, thereby recruiting a host of RNA‐binding proteins and coordinating the nuclear retention, splicing, and processing of specific mRNAs. Detailed imaging and biochemical studies demonstrate that the structural organization of NEAT1 constrains paraspeckle geometry, establishing these membraneless compartments as pivotal regulators of gene expression and RNA metabolism."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its structural role, NEAT1 contributes significantly to stress responses and the modulation of immune signaling. Acting as a downstream effector of the p53 pathway, NEAT1 not only supports tumor‐suppressive processes by curbing oncogene‐induced transformation but also facilitates the activation of various inflammasomes—enhancing the processing of pro-caspase‑1 and stabilizing mature caspase‑1—to regulate pro‐inflammatory cytokine production. In viral settings, NEAT1 relocalizes from paraspeckles to the cytoplasm, thereby aiding in the orchestration of antiviral gene expression programs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition, NEAT1 plays critical roles in developmental and differentiation processes. It is indispensable for proper tissue homeostasis—from governing mammary gland morphogenesis and corpus luteum formation to regulating muscle cell differentiation and vascular smooth muscle cell phenotypic switching. NEAT1 further modulates adipogenesis and maintains cellular pluripotency by influencing alternative polyadenylation events and interacting with key transcription factors. These functions underscore its broad impact on cell fate determination and regeneration."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "12", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAberrant NEAT1 expression is also closely associated with a broad spectrum of chronic diseases, positioning it as a promising therapeutic target. By interacting with chromatin modifiers, RNA‐binding proteins, and microRNAs, NEAT1 modulates signaling cascades that govern metabolic reprogramming in cancer, neuronal survival in neurodegenerative disorders (including Parkinson’s and Alzheimer’s diseases), myocardial ischemia–reperfusion injury, pulmonary and liver fibrosis, diabetic nephropathy, and even pathological bone resorption leading to implant loosening. Moreover, its involvement in regulating inflammatory responses and angiogenic as well as fibrotic processes further highlights NEAT1’s potential as a central modulator in sepsis‐induced injuries and vascular pathologies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuntao S Mao, Hongjae Sunwoo, Bin Zhang, et al. 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| NCBI Gene ID | 100616160 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR4655 has 379 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for MIR4655 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4655 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4655 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR4655 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4655 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR4655 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4655 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR4655 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR4655 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |