| HGNC Family | Non-coding RNAs |
| Name | microRNA 4688 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of abstracts provided offers an extensive overview of vitronectin’s multifaceted roles in physiology and disease. Across diverse studies, vitronectin is shown to act as a thrombus stabilizer that modulates platelet aggregation and fibrin formation, to regulate vascular smooth muscle cell migration and neointima formation, and to influence inflammation and cell survival in contexts such as lung injury, ischemic stroke, and fibrogenesis. Moreover, vitronectin has been implicated in neuronal differentiation and excitability through its interactions with integrins and other receptors, and in facilitating immune cell functions such as modulation of neutrophil apoptosis and efferocytosis. These reports collectively underscore vitronectin’s involvement in cell–matrix interactions, hemostasis, and tissue remodeling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, despite the query’s focus on MIR4688, none of the abstracts addresses or provides evidence regarding the function of MIR4688. While the studies comprehensively delineate the mechanisms by which vitronectin influences thrombosis, vascular remodeling, neural differentiation, immune cell regulation, and even tumor-associated processes"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "18", "end_ref": "32"}]}, {"type": "t", "text": ", there is no discussion or data linking MIR4688 to these processes. As such, the specific function—or even the involvement—of MIR4688 within these pathways remains uncharacterized based on this corpus. Future targeted investigations will be necessary to determine whether MIR4688 plays a regulatory role in vitronectin-related signaling or in any of the diverse biological phenomena these studies describe.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lin Peng, Nitin Bhatia, Andrew C Parker, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Endogenous vitronectin and plasminogen activator inhibitor-1 promote neointima formation in murine carotid arteries."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/01.atv.0000019360.14554.53"}], "href": "https://doi.org/10.1161/01.atv.0000019360.14554.53"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12067901"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12067901"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Marnie S Roberts, Alison J Woods, Peter E Shaw, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ERK1 associates with alpha(v)beta 3 integrin and regulates cell spreading on vitronectin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M208607200"}], "href": "https://doi.org/10.1074/jbc.M208607200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12393886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12393886"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Vivian de Waard, E Karin Arkenbout, Peter Carmeliet, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Cellular prion protein interaction with vitronectin supports axonal growth and is compensated by integrins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.03459"}], "href": "https://doi.org/10.1242/jcs.03459"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17504807"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17504807"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yuko Tsuruta, Young-Jun Park, Gene P Siegal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of vitronectin in lipopolysaccaride-induced acute lung injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.179.10.7079"}], "href": "https://doi.org/10.4049/jimmunol.179.10.7079"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17982099"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17982099"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jianbo Wu, Lin Peng, Grainne A McMahon, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin accumulates in the interstitium but minimally impacts fibrogenesis in experimental chronic kidney disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Renal Physiol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajprenal.00701.2010"}], "href": "https://doi.org/10.1152/ajprenal.00701.2010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21270094"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21270094"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Anthony J Courey, Jeffrey C Horowitz, Kevin K Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The vitronectin-binding function of PAI-1 exacerbates lung fibrosis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2010-12-324574"}], "href": "https://doi.org/10.1182/blood-2010-12-324574"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21734232"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21734232"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Laurent Mesnard, Cédric Rafat, Sophie Vandermeersch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin dictates intraglomerular fibrinolysis in immune-mediated glomerulonephritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.11-180752"}], "href": "https://doi.org/10.1096/fj.11-180752"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21764994"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21764994"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Hong-Beom Bae, Jaroslaw W Zmijewski, Jessy S Deshane, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin inhibits neutrophil apoptosis through activation of integrin-associated signaling pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Cell Mol Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1165/rcmb.2011-0187OC"}], "href": "https://doi.org/10.1165/rcmb.2011-0187OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22281987"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22281987"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Rong Li, Meiping Ren, Ni Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin increases vascular permeability by promoting VE-cadherin internalization at cell junctions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0037195"}], "href": "https://doi.org/10.1371/journal.pone.0037195"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22606350"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22606350"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Hong-Beom Bae, Jean-Marc Tadie, Shaoning Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin inhibits efferocytosis through interactions with apoptotic cells as well as with macrophages."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1200625"}], "href": "https://doi.org/10.4049/jimmunol.1200625"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23345331"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23345331"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Yutaka Furutani, Miwa Kawasaki, Hitomi Matsuno, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin induces phosphorylation of ezrin/radixin/moesin actin-binding proteins through binding to its novel neuronal receptor telencephalin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.383851"}], "href": "https://doi.org/10.1074/jbc.M112.383851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23019340"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23019340"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Candace D Gildner, Daniel C Roy, Christopher S Farrar, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Abrogation of plasminogen activator inhibitor-1-vitronectin interaction ameliorates acute kidney injury in murine endotoxemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0120728"}], "href": "https://doi.org/10.1371/journal.pone.0120728"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25799354"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25799354"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Kei Hashimoto, Fumi Sakane, Natsumi Ikeda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin promotes the progress of the initial differentiation stage in cerebellar granule cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Neurosci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mcn.2015.11.013"}], "href": "https://doi.org/10.1016/j.mcn.2015.11.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26640242"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26640242"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Carmen Capone, Emmanuel Cognat, Lamia Ghezali, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reducing Timp3 or vitronectin ameliorates disease manifestations in CADASIL mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.24573"}], "href": "https://doi.org/10.1002/ana.24573"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26648042"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26648042"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Amanda K Wheaton, Miranda Velikoff, Manisha Agarwal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The vitronectin RGD motif regulates TGF-β-induced alveolar epithelial cell apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Lung Cell Mol Physiol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajplung.00424.2015"}], "href": "https://doi.org/10.1152/ajplung.00424.2015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27106291"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27106291"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Melanie C Mühlenkamp, Teresia Hallström, Ingo B Autenrieth, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitronectin Binds to a Specific Stretch within the Head Region of Yersinia Adhesin A and Thereby Modulates Yersinia enterocolitica Host Interaction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Innate Immun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000449200"}], "href": "https://doi.org/10.1159/000449200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27798934"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27798934"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "M Luo, Y Ji, Y Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Plasminogen activator inhibitor-1 regulates the vascular expression of vitronectin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Thromb Haemost (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jth.13869"}], "href": "https://doi.org/10.1111/jth.13869"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29028290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29028290"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Matthew P Keasey, Cuihong Jia, Lylyan F Pimentel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Blood vitronectin is a major activator of LIF and IL-6 in the brain through integrin-FAK and uPAR signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.202580"}], "href": "https://doi.org/10.1242/jcs.202580"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29222114"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29222114"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Tian-Le Shen, Mi-Na Liu, Qin Zhang, et al. 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| Synonyms | MIR-4688 |
| NCBI Gene ID | 100616368 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR4688 has 254 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for MIR4688 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4688 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4688 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR4688 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4688 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR4688 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of MIR4688 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR4688 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR4688 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR4688 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |