MIR4801 Gene

HGNC Family Non-coding RNAs
Name microRNA 4801
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nUbiquitin‐specific protease 47 (USP47) has emerged as a critical regulator in multiple disease contexts. In chronic myelogenous leukemia (CML), USP47 facilitates DNA damage repair and sustains the proliferation of both tyrosine kinase inhibitor (TKI)–sensitive and –resistant cells by stabilizing factors such as the Y‐box binding protein 1. Its inhibition not only suppresses leukemic cell growth but also curtails the leukemic stem/progenitor cell pool, offering a promising strategy to overcome TKI resistance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the gastrointestinal tract, USP47 exerts an anti‐inflammatory effect. By removing K63‐linked polyubiquitin chains from TRAF6, it dampens NF‐κB signaling and thereby mitigates inflammatory responses in intestinal epithelial cells. Loss of USP47 leads to heightened proinflammatory cytokine production and more severe colitis, underscoring its role in protecting against inflammatory bowel disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nUSP47 also contributes to tissue regeneration and the cellular response to oxidative injury. In the liver, its function is linked to the regenerative proliferation of hepatocytes following injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In the skin, USP47 induction in response to oxidative stress regulates mitochondrial homeostasis by modulating the degradation of key proteins like nicotinamide nucleotide transhydrogenase (NNT). Deficiency of USP47 aggravates oxidative damage, as evidenced by increased reactive oxygen species accumulation and disrupted energy production."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in cellular stress and regenerative responses, USP47 influences the tumor microenvironment. In prostate cancer models, decreased USP47 expression is associated with slower tumor growth, due in part to elevated infiltration of immune cells—including cytotoxic T lymphocytes, neutrophils, macrophages, and natural killer cells—which results in enhanced antitumor immune responses. These findings position USP47 not only as a mediator of intrinsic tumor cell survival but also as an important modulator of the host immune response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hu Lei, Han-Zhang Xu, Hui-Zhuang Shan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeting USP47 overcomes tyrosine kinase inhibitor resistance and eradicates leukemia stem/progenitor cells in chronic myelogenous leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-020-20259-0"}], "href": "https://doi.org/10.1038/s41467-020-20259-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33397955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33397955"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hu Lei, Li Yang, Hanzhang Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin-specific protease 47 regulates intestinal inflammation through deubiquitination of TRAF6 in epithelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci China Life Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11427-021-2040-8"}], "href": "https://doi.org/10.1007/s11427-021-2040-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35235149"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35235149"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yuwen Zhu, Yan Guo, Hong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin specific peptidase 47 contributes to liver regeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2023.121967"}], "href": "https://doi.org/10.1016/j.lfs.2023.121967"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37487274"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37487274"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiaoqian Li, Kun Qian, Yuehua Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin-specific peptidase 47 (USP47) regulates cutaneous oxidative injury through nicotinamide nucleotide transhydrogenase (NNT)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Toxicol Appl Pharmacol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.taap.2023.116734"}], "href": "https://doi.org/10.1016/j.taap.2023.116734"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37924851"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37924851"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Qian-Lan Wang, Shun-Yuan Lu, Dan-Dan Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP47 deficiency in mice modulates tumor infiltrating immune cells and enhances antitumor immune responses in prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Immunol Immunother (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00262-024-03730-5"}], "href": "https://doi.org/10.1007/s00262-024-03730-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38832955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38832955"}]}]}]}
NCBI Gene ID 100616435
API
Download Associations
Predicted Functions View MIR4801's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR4801's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR4801's ARCHS4 Predicted Functions.

Functional Associations

MIR4801 has 367 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for MIR4801 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4801 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4801 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4801 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR4801 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR4801 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR4801 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR4801 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR4801 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.