| HGNC Family | Non-coding RNAs |
| Name | microRNA 490 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent investigations have revealed that the miR‐490 family (encompassing both miR‐490‐3p and miR‐490‐5p) is aberrantly expressed in a wide range of human tissues and malignancies. For example, in uterine leiomyoma, deregulation of miR‐490 was identified, while in hepatocellular carcinoma (HCC) miR‐490‐3p was found up‐regulated where it surprisingly promoted cell proliferation, migration, invasion, and epithelial–mesenchymal transition (EMT) by enhancing the expression of ERGIC3 in an Ago2‐dependent manner. In addition, enforced expression of miR‐490‐5p in bladder cancer cells induced G1‐phase arrest by directly targeting the oncogene c‐Fos, and in lung cancer models, miR‐490‐3p overexpression led to reduced proliferation via inhibition of CCND1. Likewise, in ovarian carcinoma, increased miR‐490‐3p induced cell cycle arrest and apoptosis by directly targeting CDK1, thereby curtailing tumorigenesis and progression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to these oncogenic roles, several studies have demonstrated potent tumor‐suppressive functions for miR‐490 in diverse cancers. In osteosarcoma, restoration of miR‐490‐3p diminished cell proliferation and tumorigenicity by down‐regulating HMGA2; similarly, its down‐regulation in renal cell carcinoma has been noted, although its precise function therein remains to be fully elucidated. In colorectal and endometrial cancers, reduced miR‐490‐3p levels are associated with enhanced invasiveness and metastasis, with direct targeting of key regulators such as TGF‑β1 mediating growth inhibition. Moreover, in HCC and triple‐negative breast cancer, miR‐490 attenuates oncogenic signaling by targeting regulators such as E2F2, ECT2, TNKS2, and other mediators, leading to increased apoptosis and suppression of invasion. Additional studies further showed that in HCC models miR‐490‐3p targeting ATG7 curtailed autophagy‐related proliferation, while in colorectal carcinoma direct repression of RAB14 contributed to tumor suppression. Finally, in another HCC study, miR‐490‐5p inhibited cell migration and invasion by down‐regulating ROBO1, and suppression of vasculogenic mimicry in triple‐negative breast cancer was achieved via targeting TWIST1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its direct regulation of cell proliferation and survival, miR‐490 is embedded in complex competing endogenous RNA (ceRNA) networks that further modulate its function. In HCC, for instance, lncRNA CCAT1 “sponges” miR‐490‐3p to relieve its suppression on CDK1, thus facilitating cell proliferation and invasion. Similarly, in thoracic ossification of the ligamentum flavum, miR‐490‐3p suppresses osteogenic differentiation via direct targeting of FOXO1. In esophageal squamous cell and pharyngolaryngeal carcinomas, miR‐490‐3p contributes to the regulation of EMT by targeting MAP3K9. In prostate cancer, miR‐490‐3p exerts tumor‐suppressive actions by repressing HDAC2, whereas lncRNA‐mediated sequestration of miR‐490 leads to FRAT1 up‐regulation. In cholangiocarcinoma, negative regulation of Akirin2 by miR‐490‐3p limits angiogenesis and metastasis, and in acute myeloid leukemia, miR‐490‐3p is sequestered by CCAT1 to activate the MAPK1/c‐Myc axis. Furthermore, in atherosclerosis, Linc00299 binds miR‐490‐3p to up‐regulate AURKA, promoting vascular smooth muscle proliferation; in glioblastoma, miR‐490 modulates telomere maintenance via targeting shelterin and telomere‐associated proteins (TERF2, TNKS2, SMG1); and in non‐small cell lung cancer, lncRNA CCDC144NL‑AS1 impairs miR‐490‐3p activity, facilitating tumor progression. Finally, in prostate and colorectal cancers, ceRNA interactions involving CCAT1 and subsequent targeting of FRAT1, IRAK1, FUT1, and GPRIN2 underpin correlations with patient outcomes, while in pancreatic cancer miR‐490‐5p impedes invasion by targeting MAGI2‐AS3 and modulating EMT."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "32"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Boryana Georgieva, Ivan Milev, Ivan Minkov, et al. 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| Synonyms | MIR-490, MIRN490, HSA-MIR-490 |
| NCBI Gene ID | 574443 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR490 has 257 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for MIR490 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR490 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR490 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR490 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR490 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR490 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR490 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR490 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MIR490 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing MIR490 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR490 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR490 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR490 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR490 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR490 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR490 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |