| HGNC Family | Non-coding RNAs |
| Name | microRNA 496 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn various cancer types, microRNA‐496 (miR-496) exhibits context-dependent regulatory functions. In lung adenocarcinoma, miR-496 suppresses the oncogenic long noncoding RNA DANCR via a RISC-dependent mechanism and modulates mTOR expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In non-small cell lung cancer, increased miR-496 restrains cell proliferation by targeting brain-derived neurotrophic factor, thereby inactivating the PI3K/Akt signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In contrast, within colorectal cancer, miR-496 acts as an oncomiR by directly targeting the tumor suppressor RASSF6, which promotes cell migration and epithelial–mesenchymal transition via Wnt signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In osteosarcoma, miR-496 is downregulated and its restoration suppresses proliferation, migration, and invasion by down-modulating eIF4E"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "; similarly, in HPV-associated oropharyngeal squamous cell carcinoma, downregulation of miR-496 by the viral E6 oncoprotein perturbs the post-transcriptional control of E2F2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In bladder cancer, miR-496 is sponged by the upregulated lncRNA NNT-AS1, leading to enhanced HMGB1 expression and aggressive tumor behavior"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while in triple-negative breast cancer, low miR-496 levels contribute to elevated Del-1 expression and increased cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In lung invasive adenocarcinoma, reduced miR-496 expression correlates with higher levels of proliferative markers including eIF3h, Ki67, and Bcl-2, suggesting a tumor-suppressive role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Finally, in hepatocellular carcinoma, a circular RNA (circ_0027791) sequesters miR-496, thereby releasing its target PDL1 from repression and promoting tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the cardiovascular and neuronal contexts, miR-496 also plays critical roles in modulating apoptosis and cell survival. In cerebral ischemia–reperfusion injury, miR-496 is downregulated, and its overexpression alleviates neuronal damage by inhibiting the pro-apoptotic factor BCL2L14."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " In a myocardial ischemia–reperfusion model, upregulation of miR-496 protects cardiomyocytes by targeting Hook3 and subsequently activating the PI3K/Akt/mTOR pathway to enhance cell proliferation while reducing apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Conversely, in vascular endothelial cells, ox-LDL induces miR-496 expression, which silences the YAP gene and aggravates endothelial apoptosis and dysfunction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " In an ischemic stroke model, a competing endogenous RNA (circ_0007290) sponges miR-496; this derepression of PDCD4 leads to augmented neuronal injury, whereas restoring miR-496 levels confers neuroprotection."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies highlight the epigenetic regulation and aging-related functions of miR-496. Methylated DNA binding protein 2 (MBD2) was shown to activate miR-496 expression via promoter demethylation, thereby enabling the repression of downstream target genes involved in proliferative pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": " Moreover, miR-496 directly targets mTOR mRNA, and an inverse correlation between miR-496 levels and mTOR protein expression in peripheral blood mononuclear cells from elderly individuals points to a potential role in human lifespan modulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, in inflammatory conditions such as rheumatoid arthritis, decreased miR-496 expression in synovial tissues and IL-1β-stimulated fibroblast-like synoviocytes leads to enhanced cell viability through upregulation of MMP10 and activation of the NF-κB signaling pathway; conversely, overexpression of miR-496 suppresses synoviocyte proliferation and promotes apoptosis, underscoring its potential as a therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qing-Chun Lu, Zhuang-Hua Rui, Zhong-Liang Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA-DANCR contributes to lung adenocarcinoma progression by sponging miR-496 to modulate mTOR expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.13420"}], "href": "https://doi.org/10.1111/jcmm.13420"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29266795"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29266795"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rui Ma, Pan Zhu, Shu Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-496 suppress tumorigenesis via targeting BDNF-mediated PI3K/Akt signaling pathway in non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.08.046"}], "href": "https://doi.org/10.1016/j.bbrc.2019.08.046"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31421833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31421833"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hua Wang, Bianbian Yan, Pan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-496 promotes migration and epithelial-mesenchymal transition by targeting RASSF6 in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29066"}], "href": "https://doi.org/10.1002/jcp.29066"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31273789"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31273789"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ni-Nan Qi, Shuo Tian, Xin Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Up-regulation of microRNA-496 suppresses proliferation, invasion, migration and in vivo tumorigenicity of human osteosarcoma cells by targeting eIF4E."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochimie (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biochi.2019.04.017"}], "href": "https://doi.org/10.1016/j.biochi.2019.04.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30998968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30998968"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Dayna Sais, Xiaoying Zhang, Tânia Monteiro Marques, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human papillomavirus 16 E6 modulates the expression of miR-496 in oropharyngeal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Virology (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.virol.2018.05.022"}], "href": "https://doi.org/10.1016/j.virol.2018.05.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29935424"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29935424"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Deyao Wu, Tielong Zhang, Jie Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "NNT-AS1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " enhances the malignant phenotype of bladder cancer by acting as a competing endogenous RNA on microRNA-496 thereby increasing HMGB1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.102591"}], "href": "https://doi.org/10.18632/aging.102591"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31848324"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31848324"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Soo Jung Lee, Jae-Hwan Jeong, Jeeyeon Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-496 inhibits triple negative breast cancer cell proliferation by targeting Del-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Medicine (Baltimore) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/MD.0000000000025270"}], "href": "https://doi.org/10.1097/MD.0000000000025270"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33832090"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33832090"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": " Ji-Chun "}, {"type": "b", "children": [{"type": "t", "text": "The effect of miR-496 on eIF3h in lung invasive adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Biochim Pol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18388/abp.2020_5491"}], "href": "https://doi.org/10.18388/abp.2020_5491"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34038061"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34038061"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Furong Yu, Peifei Fang, Yonghong Fang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Circ_0027791 contributes to the growth and immune evasion of hepatocellular carcinoma via the miR-496/programmed cell death ligand 1 axis in an m6A-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Environ Toxicol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/tox.24188"}], "href": "https://doi.org/10.1002/tox.24188"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38546290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38546290"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Xiaoxi Yao, Rui Yao, Jiping Yi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of miR-496 decreases cerebral ischemia/reperfusion injury by negatively regulating BCL2L14."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurosci Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neulet.2018.12.039"}], "href": "https://doi.org/10.1016/j.neulet.2018.12.039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30597231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30597231"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Yongping Jin, Shimao Ni "}, {"type": "b", "children": [{"type": "t", "text": "miR-496 remedies hypoxia reoxygenation-induced H9c2 cardiomyocyte apoptosis via Hook3-targeted PI3k/Akt/mTOR signaling pathway activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.29316"}], "href": "https://doi.org/10.1002/jcb.29316"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31436348"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31436348"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Jun Hu, Te Liu, Zhuang Zhang, et al. 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| Synonyms | MIRN496, HSA-MIR-496, MIR-496 |
| NCBI Gene ID | 574454 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR496 has 290 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for MIR496 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR496 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR496 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR496 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR496 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR496 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR496 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR496 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MIR496 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing MIR496 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR496 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR496 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR496 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR496 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR496 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |