MIR504 Gene

HGNC Family Non-coding RNAs
Name microRNA 504
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMicroRNA‐504 (miR-504) has emerged as a context‐dependent regulator in cancer biology. In certain settings, miR-504 functions oncogenically by directly binding the 3′ untranslated region of p53 mRNA, thereby reducing p53 protein levels and attenuating its transcriptional activity, which leads to decreased apoptosis and impaired cell cycle arrest."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In oral squamous cell carcinoma, miR-504 expression is modulated by connective tissue growth factor such that its ectopic expression enhances migration and invasion via repression of the forkhead transcription factor FOXP1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Conversely, in pancreatic ductal adenocarcinoma, miR-504 levels are elevated and correlate with lower expression of the tumor-suppressive klotho gene and increased phospho-IGF-1R, associating miR-504 with a poorer prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn head and neck as well as hypopharyngeal squamous cell carcinomas, miR-504 is found to be downregulated; restoration of miR-504 in these contexts results in inhibited cell proliferation and migration through targeting key cell cycle regulators such as RB1 and CDK6."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In gastric cancer models, reconstitution of TFF1 leads to suppression of miR-504 levels, thereby specifically relieving its inhibitory effect on p53 and promoting p53-dependent tumor suppression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Meanwhile, in nasopharyngeal carcinoma, increased miR-504 expression contributes to radio-resistance by targeting NRF1 and impairing mitochondrial respiratory function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies in glioma and hepatocellular carcinoma further support the multifaceted role of miR-504. In glioma, overexpression of miR-504 suppresses tumor proliferation and induces apoptosis through downregulation of FOXP1, acting as a tumor suppressor"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", while in hepatocellular carcinoma, miR-504 is frequently downregulated and its enforced expression inhibits cell proliferation and invasion by directly targeting the Wnt receptor FZD7, thereby dampening Wnt/β-catenin signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, in glioblastoma stem cells, decreased miR-504 levels correlate with enhanced self-renewal and invasive capacity; restoring miR-504 levels inhibits these tumorigenic properties by targeting Grb10 and even modulating the tumor microenvironment via extracellular vesicle transfer to microglia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wenwei Hu, Chang S Chan, Rui Wu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Connective tissue growth factor modulates oral squamous cell carcinoma invasion by activating a miR-504/FOXP1 signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2011.423"}], "href": "https://doi.org/10.1038/onc.2011.423"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21927029"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21927029"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Diego Sanchez-Martínez, Ewelina Krzywinska, Moeez G Rathore, et al. "}, {"type": "b", "children": [{"type": "t", "text": "All-trans retinoic acid (ATRA) induces miR-23a expression, decreases CTSC expression and granzyme B activity leading to impaired NK cell cytotoxicity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biochem Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biocel.2014.01.003"}], "href": "https://doi.org/10.1016/j.biocel.2014.01.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24440757"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24440757"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Naoko Kikkawa, Takashi Kinoshita, Nijiro Nohata, et al. "}, {"type": "b", "children": [{"type": "t", "text": "microRNA-504 inhibits cancer cell proliferation via targeting CDK6 in hypopharyngeal squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Oncol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijo.2014.2349"}], "href": "https://doi.org/10.3892/ijo.2014.2349"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24647829"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24647829"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Mohammed Soutto, Zheng Chen, Mohamed A Saleh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TFF1 activates p53 through down-regulation of miR-504 in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.2156"}], "href": "https://doi.org/10.18632/oncotarget.2156"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25015107"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25015107"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Luqing Zhao, Min Tang, Zheyu Hu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "A tumor-suppressive microRNA, miR-504, inhibits cell proliferation and promotes apoptosis by targeting FOXP1 in human glioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2016.01.051"}], "href": "https://doi.org/10.1016/j.canlet.2016.01.051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26854715"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26854715"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Hui Quan, Bo Li, Jianjun Yang "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-504 functions as a tumor suppressor in hepatocellular carcinoma through inhibiting Frizzled-7-mediated-Wnt/β-catenin signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.07.150"}], "href": "https://doi.org/10.1016/j.biopha.2018.07.150"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30142536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30142536"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ariel Bier, Xin Hong, Simona Cazacu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-504 modulates the stemness and mesenchymal transition of glioma stem cells and their interaction with microglia via delivery by extracellular vesicles."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-020-03088-3"}], "href": "https://doi.org/10.1038/s41419-020-03088-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33093452"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33093452"}]}]}]}
Synonyms MIR-504, MIRN504, HSA-MIR-504
NCBI Gene ID 574507
API
Download Associations
Predicted Functions View MIR504's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR504's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR504's ARCHS4 Predicted Functions.

Functional Associations

MIR504 has 387 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for MIR504 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR504 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR504 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR504 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR504 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR504 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR504 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR504 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR504 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MIR504 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of MIR504 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MIR504 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR504 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR504 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR504 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR504 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.