MIR509-2 Gene

HGNC Family Non-coding RNAs
Name microRNA 509-2
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMicroRNA miR-509-5p (originating from the MIR509-2 gene locus) has emerged as a promising regulator in oncology, where altered expression appears to impact malignant cell behaviors. In renal cell carcinoma, investigations have focused on defining the expression and function of miR-509-5p, with preliminary evidence suggesting that dysregulation of this microRNA may influence tumor cell proliferation and survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn breast cancer studies, miR-509-5p is being dissected for its role in modulating cell growth and the metastatic process. Researchers are exploring its potential as a therapeutic target, particularly by evaluating how altering miR-509-5p expression might suppress tumor progression and dissemination."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSimilarly, in colorectal cancer, aberrant levels of miR-509-5p have been implicated in the complex network of regulatory factors that drive tumorigenesis and progression. The emerging data underscore a functional role for miR-509-5p that may include the repression of oncogenic pathways, further solidifying its consideration as a candidate for targeted intervention."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt should be noted that not all abstracts provided address the function of MIR509-2. For example, one study focused on the role of SLURP proteins in the context of palmoplantar keratoderma and associated pain, without any mention of miR-509-5p."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " This contrast highlights the specificity of the microRNA-related investigations in the context of cancer biology.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "W-B Zhang, Z-Q Pan, Q-S Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor suppressive miR-509-5p contributes to cell migration, proliferation and antiapoptosis in renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ir J Med Sci (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11845-013-0941-y"}], "href": "https://doi.org/10.1007/s11845-013-0941-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23619562"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23619562"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Y-H Song, J Wang, G Nie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-509-5p functions as an anti-oncogene in breast cancer via targeting SOD2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2017)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28925482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28925482"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mahmoud A Elrebehy, Tamer M Abdelghany, Mostafa M Elshafey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-509-5p promotes colorectal cancer cell ferroptosis by targeting SLC7A11."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2023.154557"}], "href": "https://doi.org/10.1016/j.prp.2023.154557"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37229918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37229918"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Rachel L Weinberg, Suyeon Kim, Zixuan Pang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pain Hypersensitivity in SLURP1 and SLURP2 Knock-out Mouse Models of Hereditary Palmoplantar Keratoderma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.0260-23.2024"}], "href": "https://doi.org/10.1523/JNEUROSCI.0260-23.2024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38866482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38866482"}]}]}]}
Synonyms MIRN509-2
NCBI Gene ID 100126301
API
Download Associations
Predicted Functions View MIR509-2's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR509-2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR509-2's ARCHS4 Predicted Functions.

Functional Associations

MIR509-2 has 156 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for MIR509-2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR509-2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR509-2 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR509-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR509-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR509-2 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of MIR509-2 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR509-2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR509-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR509-2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.