MIR520D Gene

HGNC Family Non-coding RNAs
Name microRNA 520d
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMicroRNA MIR520D isoforms, including both the –3p and –5p strands, have been implicated in a variety of cellular processes across diverse pathological conditions. For instance, MIR520D was found to be significantly up-regulated in chronic periodontitis tissues relative to healthy gingiva, suggesting a potential role in inflammatory responses and disease progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In multiple cancer types, MIR520D exhibits tumor‐suppressive properties: in gastric cancer, the –3p strand is down-regulated and its restoration suppresses proliferation, migration, and invasion by targeting the EphA2 gene"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "; in hepatocellular carcinoma and osteosarcoma, similar down-regulation is observed with re-expression inhibiting tumor growth and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its role in inhibiting tumor progression through direct targets, the MIR520D family exerts complex regulatory effects on metastasis. The –5p strand has been reported to target key modulators such as TWIST1, leading to decreased miR-10b levels, restoration of E-Cadherin expression, and ultimately reduced cellular invasiveness and proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similarly, in cervical cancer, MIR520D-5p is shown to regulate expression of several genes implicated in tumor development"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while in melanoma, downregulation of MIR520D-3p correlates with increased expression of ASF1B, a gene whose targeting by MIR520D-3p leads to suppression of tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOutside of the oncological context, MIR520D also plays roles in other diseases. In Parkinson's disease, elevated levels of the –5p form in serum were linked to reduced ceruloplasmin gene expression, potentially contributing to disruptions in brain iron metabolism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " In astrocytoma, both MIR520D-3p and –5p are associated with modulation of SIRPα expression, a protein involved in immune interactions, with expression patterns correlating with tumor grade."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Moreover, MIR520D-5p has been observed to revert undifferentiated hepatoma cells toward a more benign state by inducing demethylation and upregulating P53"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ", and in myocardial cells subjected to hypoxia/reoxygenation injury, overexpression of MIR520D-3p attenuates cell viability loss and apoptosis through partial regulation of autophagy via ATG12."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Finally, within the context of infectious disease, the MIR520D family (sharing its seed sequence with MIR372 and MIR373) modulates arginine metabolism in human macrophages by targeting the arginine transporter SLC7A2, thereby influencing polyamine production and facilitating Leishmania survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Young Hwa Lee, Hee Sam Na, So Yeon Jeong, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA 520d-3p inhibits gastric cancer cell proliferation, migration, and invasion by downregulating EphA2 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-014-2164-6"}], "href": "https://doi.org/10.1007/s11010-014-2164-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25063221"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25063221"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yun Xiang, Yongguo Huang, Hong Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deregulation of miR-520d-3p promotes hepatocellular carcinoma development via lncRNA MIAT regulation and EPHA2 signaling activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.11.014"}], "href": "https://doi.org/10.1016/j.biopha.2018.11.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30551417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30551417"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "T-D He, J-K Zhu, Z-X Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-520d-3p inhibits osteosarcoma progression by degradation of Akt1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201804_14821"}], "href": "https://doi.org/10.26355/eurrev_201804_14821"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29762834"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29762834"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Pinchas Tsukerman, Rachel Yamin, Einat Seidel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-520d-5p directly targets TWIST1 and downregulates the metastamiR miR-10b."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.2559"}], "href": "https://doi.org/10.18632/oncotarget.2559"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25426550"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25426550"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Li Zhang, Fuwei Liu, Yajie Fu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-520d-5p functions as a tumor-suppressor gene in cervical cancer through targeting PTK2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2020.117558"}], "href": "https://doi.org/10.1016/j.lfs.2020.117558"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32198053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32198053"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xian Shi, Xidan Xu, Nian Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-520d-3p suppresses melanoma cells proliferation by inhibiting the anti-silencing function 1B histone chaperone."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.2001914"}], "href": "https://doi.org/10.1080/21655979.2021.2001914"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34872448"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34872448"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Lirong Jin, Wenbin Wan, Lingyan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated microRNA-520d-5p in the serum of patients with Parkinson's disease, possibly through regulation of cereloplasmin expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurosci Lett (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neulet.2018.09.034"}], "href": "https://doi.org/10.1016/j.neulet.2018.09.034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30243884"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30243884"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ravindra Pramod Deshpande, Y B V K Chandra Sekhar, Manas Panigrahi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "miR-520d-5p can reduce the mutations in hepatoma cancer cells and iPSCs-derivatives."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-019-5786-y"}], "href": "https://doi.org/10.1186/s12885-019-5786-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31202279"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31202279"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Kunpeng Wu, Ying Chen, Deming Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-520d-3p alleviates hypoxia/reoxygenation-induced damage in human cardiomyocytes by targeting ATG-12."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Thromb Thrombolysis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11239-020-02352-9"}], "href": "https://doi.org/10.1007/s11239-020-02352-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33389611"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33389611"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "J C R Fernandes, S M Muxel, M A López-Gonzálvez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Early Leishmania infectivity depends on miR-372/373/520d family-mediated reprogramming of polyamines metabolism in THP-1-derived macrophages."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-024-51511-y"}], "href": "https://doi.org/10.1038/s41598-024-51511-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38200138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38200138"}]}]}]}
Synonyms MIRN520D
NCBI Gene ID 574482
API
Download Associations
Predicted Functions View MIR520D's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR520D's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR520D's ARCHS4 Predicted Functions.

Functional Associations

MIR520D has 201 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for MIR520D from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR520D gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR520D gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR520D gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR520D gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR520D gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR520D gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MIR520D from the GeneSigDB Published Gene Signatures dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR520D gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR520D gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR520D gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.