MIR543 Gene

HGNC Family Non-coding RNAs
Name microRNA 543
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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This early body of work demonstrates that miR‐543 expression is frequently altered, suggesting its potential as both a biomarker and a regulator of oncogenesis and aging processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the mechanistic level, miR‐543 has been documented to regulate a diverse array of signaling pathways and cellular processes by targeting distinct mRNAs. In gastric cancer and diabetic retinopathy models, for instance, miR‐543 directly targets SIRT1—thereby promoting cell proliferation, cell cycle progression, and angiogenesis through downstream effectors and by fostering an epithelial–mesenchymal transition. Similar regulatory loops have been observed in esophageal, colorectal, clear cell renal, and certain lung cancers where miR‐543 modulates oncogenic factors including PLA2G4A, PTEN, PRMT9, and KLF6. Its oncogenic activities are further underscored in viral myocarditis, pituitary adenomas, nasopharyngeal carcinoma, and oral squamous cell carcinoma via repression of targets such as DNAJB1, Smad7, JAM‐A, CYP3A5, and MTA1. In contrast, in glioma and a subset of ovarian cancers, miR‐543 appears to function as a tumor suppressor by attenuating proliferation and invasion—underscoring that its biological effects are highly context‐ and tissue–dependent. Importantly, a series of studies also reveal that long non–coding RNAs (including linc-PINT, SNHG10, and others) can “sponge” miR‐543, thereby modulating its availability and downstream activity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond cancer, miR‐543 has been implicated in other pathological conditions including metabolic dysfunction, chemoresistance, neurodegeneration, and inflammatory injury. Studies in breast cancer, colorectal cancer, cervical cancer, ovarian cancer (including exosome–mediated transfer), glioma, lung adenocarcinoma, small–cell lung carcinoma, and even leukemia underscore that modulating miR‐543 levels can influence cell survival, migration, invasion, and drug sensitivity. In several instances, targeting the miR‐543 regulatory axis—whether by modulating its expression directly or by interfering with its upstream long non–coding RNAs such as GATA6–AS1—restores the expression of critical tumor suppressors (e.g., PTEN, SIRT1, TWIST1, VCAN) and has therapeutic potential. Collectively, these findings highlight the complexity, context-dependency, and translational promise of miR‐543 as both a prognostic marker and a therapeutic target."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "25", "end_ref": "35"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yang Du, Xiu-Heng Liu, Heng-Cheng Zhu, et al. 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Synonyms HSA-MIR-543, MIR-543, MIRN543
NCBI Gene ID 100126335
API
Download Associations
Predicted Functions View MIR543's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR543's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR543's ARCHS4 Predicted Functions.

Functional Associations

MIR543 has 222 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for MIR543 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR543 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR543 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of MIR543 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR543 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR543 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR543 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR543 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR543 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of MIR543 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR543 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR543 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of MIR543 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR543 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR543 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.