MIR544A Gene

HGNC Family Non-coding RNAs
Name microRNA 544a
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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In gastric cancer, one study revealed that miR-544a directly targets the IRX1 gene, thereby repressing its protein expression and promoting cell proliferation and cell cycle progression, suggesting an oncogenic role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a separate investigation in gastric cancer, overexpression of miR-544a induced an epithelial-to-mesenchymal transition (EMT) phenotype by suppressing CDH1 and AXIN2, leading to increased expression of mesenchymal markers such as VIM, SNAI1, and ZEB1, which ultimately facilitates activation of the WNT signaling cascade via stabilization and nuclear import of β-catenin."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the realm of breast cancer, miR-544a appears to exert dual and context-specific functions. In one report, differential expression of miR-544a was associated with distinct migratory behaviors: in less aggressive breast cancer cells, its overexpression promoted migration and invasion by targeting adhesion molecules such as CDH1, whereas in more aggressive cells an inverse correlation was observed between miR-544a levels and invasiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Conversely, investigation in triple negative breast cancer demonstrated that miR-544a acted as a tumor suppressor by directly targeting the 3′-UTRs of Bcl6 and Stat3 mRNAs leading to significant inhibition of cell proliferation, migration, and invasion, as well as a marked reduction in xenograft tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond cancer cell intrinsic effects, miR-544a is also modulated by the tumor microenvironment and other regulatory RNAs. For example, in hepatocellular carcinoma, upregulation of miR-544 in natural killer (NK) cells correlates with diminished cytotoxicity against liver cancer cells; mechanistic studies revealed that miR-544 negatively regulates RUNX3 expression, and that its inhibition via lncRNA GAS5 overexpression can restore NK cell function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Moreover, protocols have been developed to inhibit DICER-mediated processing of miR-544 as a novel strategy to counteract its function, which may have therapeutic implications."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition, emerging evidence suggests a role for miR-544a in other disease contexts. One study investigating cerebral ischemia-reperfusion injury examined the association between miR-544 expression and the extent of post-ischemic inflammation and apoptosis, although the detailed molecular mechanisms require further exploration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In the cardiovascular field, a recent report identified that a circular RNA (circMIRIAF) acts as a sponge for miR-544a; sequestration of miR-544a by circMIRIAF derepresses the expression of WDR12, which in turn activates Notch1 signaling and exacerbates myocardial ischemia-reperfusion injury via enhanced oxidative stress and inflammation. This finding highlights miR-544a as a potential therapeutic target in myocardial injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qiaoming Zhi, Xiaobo Guo, Lei Guo, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "miR-544a induces epithelial-mesenchymal transition through the activation of WNT signaling pathway in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Carcinogenesis (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/carcin/bgv106"}], "href": "https://doi.org/10.1093/carcin/bgv106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26264654"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26264654"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shangfeng Sun, Changying Su, Yunxiao Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-544a Regulates Migration and Invasion in Colorectal Cancer Cells via Regulation of Homeobox A10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dig Dis Sci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10620-016-4186-2"}], "href": "https://doi.org/10.1007/s10620-016-4186-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27165435"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27165435"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhengzhi Zhu, Shengying Wang, Jinhai Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-544 down-regulates both Bcl6 and Stat3 to inhibit tumor growth of human triple negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1515/hsz-2016-0104"}], "href": "https://doi.org/10.1515/hsz-2016-0104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27186677"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27186677"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Peipei Fang, Luxia Xiang, Weilai Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA GAS5 enhanced the killing effect of NK cell on liver cancer through regulating miR-544/RUNX3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Innate Immun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1753425919827632"}], "href": "https://doi.org/10.1177/1753425919827632"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30774011"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30774011"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Christopher L Haga, Sai Pradeep Velagapudi, Jessica L Childs-Disney, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-544 inhibits inflammatory response and cell apoptosis after cerebral ischemia reperfusion by targeting IRAK4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201809_15825"}], "href": "https://doi.org/10.26355/eurrev_201809_15825"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30229835"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30229835"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Lianhong Yin, Lili Li, Meng Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "circMIRIAF aggravates myocardial ischemia-reperfusion injury via targeting miR-544/WDR12 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Redox Biol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.redox.2024.103175"}], "href": "https://doi.org/10.1016/j.redox.2024.103175"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38795544"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38795544"}]}]}]}
Synonyms HSA-MIR-544A, HSA-MIR-544, MIR544, MIRN544
NCBI Gene ID 664613
API
Download Associations
Predicted Functions View MIR544A's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR544A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR544A's ARCHS4 Predicted Functions.

Functional Associations

MIR544A has 112 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for MIR544A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CTD Gene-Disease Associations diseases associated with MIR544A gene/protein from the curated CTD Gene-Disease Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with MIR544A gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MIR544A from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of MIR544A gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of MIR544A gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR544A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.