| HGNC Family | Non-coding RNAs |
| Name | microRNA 548al |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA broad array of studies has advanced our understanding of hepatic lipid metabolism and the regulation of apolipoprotein B–containing lipoproteins. In these reports, key molecular players involved in the synthesis, post‐translational modification, secretion, and degradation of ApoB‐100 (and its truncated isoforms) were characterized. For example, investigations into the roles of microsomal triglyceride transfer protein, lipid peroxidation processes, and enzymes such as DGAT2 revealed mechanisms that determine very‐low density lipoprotein assembly and secretion, thereby influencing circulating lipid levels and the development of hyperlipidemia, atherosclerosis, and fatty liver disease. Notably, however, none of these studies provided any direct evidence or mention of MIR548AL."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "14"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies have focused on the interplay between lipoprotein metabolism and immune as well as receptor‐mediated pathways. Detailed work on receptors such as PCSK9 and the LDL receptor, investigations into inflammatory responses mediated by T cells reacting to apolipoprotein B peptides, and genetic association studies of loci regulating sortilin expression have underscored the complex crosstalk between metabolic and inflammatory signaling. In addition, these studies addressed how changes in hepatic clearance, VLDL catabolism, and oxidative stress shape disease phenotypes such as atherosclerosis, cardiomyopathy, and insulin resistance. Despite this extensive exploration of regulatory cascades, there is no direct mention or experimentally delineated role for MIR548AL in controlling these processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "15", "end_ref": "28"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further series of reports explored genetic models and therapeutic approaches—from RNA interference strategies targeting ApoB to pharmacological modulation of cholesteryl ester transfer protein and the development of animal models mimicking human cardiovascular and neurodegenerative conditions. These studies highlight the multifaceted regulatory landscape of lipoprotein assembly, clearance, and associated tissue pathologies. Despite the diversity of experimental models and interventions, the literature in this collection does not report any experimental findings on MIR548AL. Thus, while microRNAs are well known to regulate gene expression in metabolic pathways, the specific function of MIR548AL remains to be elucidated; future investigations should determine whether this microRNA interfaces with the complex networks governing lipoprotein metabolism and cardiometabolic disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "29", "end_ref": "43"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhouji Chen, Robin L Fitzgerald, Gustav Schonfeld "}, {"type": "b", "children": [{"type": "t", "text": "Hypobetalipoproteinemic mice with a targeted apolipoprotein (Apo) B-27.6-specifying mutation: in vivo evidence for an important role of amino acids 1254-1744 of ApoB in lipid transport and metabolism of the apoB-containing lipoprotein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M200617200"}], "href": "https://doi.org/10.1074/jbc.M200617200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11839763"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11839763"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Agnes Kulinski, Sabina Rustaeus, Jean E Vance "}, {"type": "b", "children": [{"type": "t", "text": "Microsomal triacylglycerol transfer protein is required for lumenal accretion of triacylglycerol not associated with ApoB, as well as for ApoB lipidation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M202015200"}], "href": "https://doi.org/10.1074/jbc.M202015200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12072432"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12072432"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Amy P Patterson, Zhigang Chen, Deborah C Rubin, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Hepatic secretion of apoB-100 is impaired in hypobetalipoproteinemic mice with an apoB-38.9-specifying allele."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M300275-JLR200"}], "href": "https://doi.org/10.1194/jlr.M300275-JLR200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "13130124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/13130124"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Masayoshi Yokoyama, Hiroaki Yagyu, Yunying Hu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "A targeted apoB38.9 mutation in mice is associated with reduced hepatic cholesterol synthesis and enhanced lipid peroxidation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Gastrointest Liver Physiol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpgi.00402.2005"}], "href": "https://doi.org/10.1152/ajpgi.00402.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16455790"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16455790"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Akio Kawakami, Masanori Aikawa, Peter Libby, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Apolipoprotein CIII in apolipoprotein B lipoproteins enhances the adhesion of human monocytic cells to endothelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circulation (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCULATIONAHA.105.591743"}], "href": "https://doi.org/10.1161/CIRCULATIONAHA.105.591743"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16461842"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16461842"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Satoshi Uchiyama, Takahiko Shimizu, Takuji Shirasawa "}, {"type": "b", "children": [{"type": "t", "text": "CuZn-SOD deficiency causes ApoB degradation and induces hepatic lipid accumulation by impaired lipoprotein secretion in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M603422200"}], "href": "https://doi.org/10.1074/jbc.M603422200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16921198"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16921198"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Chun-Min Lo, Brian K Nordskog, Andromeda M Nauli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Why does the gut choose apolipoprotein B48 but not B100 for chylomicron formation?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Gastrointest Liver Physiol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpgi.00123.2007"}], "href": "https://doi.org/10.1152/ajpgi.00123.2007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18006607"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18006607"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Ying Liu, John S Millar, Debra A Cromley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of acyl-CoA:diacylglycerol acyltransferase 2 with antisense oligonucleotide reduces VLDL TG and ApoB secretion in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbalip.2008.01.001"}], "href": "https://doi.org/10.1016/j.bbalip.2008.01.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18252207"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18252207"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Zhouji Chen, Elizabeth P Newberry, Jin Y Norris, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ApoB100 is required for increased VLDL-triglyceride secretion by microsomal triglyceride transfer protein in ob/ob mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M800240-JLR200"}], "href": "https://doi.org/10.1194/jlr.M800240-JLR200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18519977"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18519977"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Josefin Skogsberg, Andrea Dicker, Mikael Rydén, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ApoB100-LDL acts as a metabolic signal from liver to peripheral fat causing inhibition of lipolysis in adipocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0003771"}], "href": "https://doi.org/10.1371/journal.pone.0003771"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19020660"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19020660"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Michael M Weinstein, Liya Yin, Yiping Tu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chylomicronemia elicits atherosclerosis in mice--brief report."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.109.196329"}], "href": "https://doi.org/10.1161/ATVBAHA.109.196329"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19815815"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19815815"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Marija Tadin-Strapps, Laurence B Peterson, Anne-Marie Cumiskey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "siRNA-induced liver ApoB knockdown lowers serum LDL-cholesterol in a mouse model with human-like serum lipids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M012872"}], "href": "https://doi.org/10.1194/jlr.M012872"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21398511"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21398511"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Anne-Laure Sberna, Mahfoud Assem, Rui Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Constitutive androstane receptor activation decreases plasma apolipoprotein B-containing lipoproteins and atherosclerosis in low-density lipoprotein receptor-deficient mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.110.222497"}], "href": "https://doi.org/10.1161/ATVBAHA.110.222497"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21778422"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21778422"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Yanfeng Zhao, Xinping Chen, Hong Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel function of apolipoprotein E: upregulation of ATP-binding cassette transporter A1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0021453"}], "href": "https://doi.org/10.1371/journal.pone.0021453"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21779326"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21779326"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Brandon Ason, Jose Castro-Perez, Samnang Tep, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ApoB siRNA-induced liver steatosis is resistant to clearance by the loss of fatty acid transport protein 5 (Fatp5)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lipids (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11745-011-3596-3"}], "href": "https://doi.org/10.1007/s11745-011-3596-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21826528"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21826528"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Lolita M Forrest, Elena Boudyguina, Martha D Wilson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Echium oil reduces atherosclerosis in apoB100-only LDLrKO mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Atherosclerosis (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.atherosclerosis.2011.10.025"}], "href": "https://doi.org/10.1016/j.atherosclerosis.2011.10.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22100249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22100249"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Guohua Song, Hua Tian, Shucun Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hydrogen decreases athero-susceptibility in apolipoprotein B-containing lipoproteins and aorta of apolipoprotein E knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Atherosclerosis (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.atherosclerosis.2011.11.043"}], "href": "https://doi.org/10.1016/j.atherosclerosis.2011.11.043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22209213"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22209213"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "François Briand, Quentin Thieblemont, Agnès André, et al. 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| NCBI Gene ID | 100616215 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR548AL has 174 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for MIR548AL from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548AL gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548AL gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR548AL gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR548AL gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR548AL gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548AL gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR548AL gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |