| HGNC Family | Non-coding RNAs |
| Name | microRNA 548f-5 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the original query requested a summary of MIR548F5, none of the provided abstracts mention or address MIR548F5. Instead, the studies focus on the functions of phosphatidylinositol transfer proteins (PITPs)—in particular, the α and β isoforms—and their roles in mediating lipid signaling, membrane trafficking, and cellular homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGenetic and biochemical investigations reveal that PITPα has a more specialized role in mammalian cells; its ablation does not compromise cellular growth, global phospholipid metabolism, or the activities of the secretory and endocytic pathways. In contrast, PITPβ is indispensable for normal cellular function—as evidenced by severe developmental defects upon its absence—underscoring its role as an essential housekeeping protein that governs processes fundamental to cell viability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther mechanistic studies indicate that the phosphorylation status of PITPβ, particularly at serine residue 262, plays a crucial role in directing its association with Golgi membranes. Protein kinase C (PKC)–dependent phosphorylation at this residue is necessary for proper Golgi localization, effective sphingomyelin replenishment in the plasma membrane, and the regulation of apoptosis. Mutation of this residue (S262A) disrupts these functions, demonstrating that posttranslational modification of PITPβ is integral to its cellular roles."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to their roles in general lipid signaling and membrane dynamics, PITPs are critical in specialized cellular contexts. For example, in megakaryocytes, loss of PITP function disrupts α-granule physiology and leads to the aberrant secretion of cytokines such as transforming growth factor–β1 (TGF-β1) and interleukin-4 (IL-4). These secretory defects adversely affect hematopoietic stem and progenitor cell populations in the bone marrow, manifesting as impaired colony formation and hematopoietic dysregulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these abstracts illustrate the essential role of phosphatidylinositol transfer proteins in coupling lipid metabolism with membrane trafficking and signaling pathways that determine cell survival, differentiation, and overall functionality. It is important to note that while the query mentioned MIR548F5, the reviewed literature does not provide any information on its function, and the emphasis remains solely on the regulation and biological activities of PITPα and PITPβ in mammalian systems.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "James G Alb, Scott E Phillips, Kathleen Rostand, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic ablation of phosphatidylinositol transfer protein function in murine embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.01-09-0457"}], "href": "https://doi.org/10.1091/mbc.01-09-0457"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11907258"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11907258"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sheri M Routt, Vytas A Bankaitis "}, {"type": "b", "children": [{"type": "t", "text": "Biological functions of phosphatidylinositol transfer proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Cell Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1139/o03-089"}], "href": "https://doi.org/10.1139/o03-089"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15052341"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15052341"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Claudia M van Tiel, Martijn Schenning, Gerry T Snoek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of phosphatidylinositol transfer protein beta in NIH3T3 cells has a stimulatory effect on sphingomyelin synthesis and apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbalip.2003.08.009"}], "href": "https://doi.org/10.1016/j.bbalip.2003.08.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15164762"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15164762"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Claudia M van Tiel, Jan Westerman, Marten A Paasman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Golgi localization of phosphatidylinositol transfer protein beta requires the protein kinase C-dependent phosphorylation of serine 262 and is essential for maintaining plasma membrane sphingomyelin levels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M201532200"}], "href": "https://doi.org/10.1074/jbc.M201532200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11953429"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11953429"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Scott E Phillips, Kristina E Ile, Malika Boukhelifa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Specific and nonspecific membrane-binding determinants cooperate in targeting phosphatidylinositol transfer protein beta-isoform to the mammalian trans-Golgi network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e06-01-0089"}], "href": "https://doi.org/10.1091/mbc.e06-01-0089"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16540520"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16540520"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Martijn Schenning, Claudia M van Tiel, Karel W A Wirtz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The anti-apoptotic MAP kinase pathway is inhibited in NIH3T3 fibroblasts with increased expression of phosphatidylinositol transfer protein beta."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbamcr.2007.06.004"}], "href": "https://doi.org/10.1016/j.bbamcr.2007.06.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17683809"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17683809"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Maegan Capitano, Liang Zhao, Scott Cooper, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phosphatidylinositol transfer proteins regulate megakaryocyte TGF-β1 secretion and hematopoiesis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2017-09-806257"}], "href": "https://doi.org/10.1182/blood-2017-09-806257"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30042096"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30042096"}]}]}]}
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| Synonyms | HSA-MIR-548F-5, MIR548F-5, MIRN548F5 |
| NCBI Gene ID | 100302239 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR548F5 has 187 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for MIR548F5 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548F5 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548F5 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR548F5 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR548F5 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR548F5 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR548F5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548F5 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR548F5 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of MIR548F5 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR548F5 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |