| HGNC Family | Non-coding RNAs |
| Name | microRNA 548z |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts directly address MIR548Z, they offer insights into the molecular mechanisms that govern cell junction organization—a process in which a microRNA like MIR548Z could be implicated. For example, one study characterized JACOP, a junction‐associated coiled‐coil protein that localizes to apical junctional complexes in epithelial and endothelial cells. JACOP appears to anchor tight junctions to actin‐based cytoskeletal networks, a key step in maintaining robust cell–cell adhesion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA second study identified cingulin‐like 1 (Cgnl1) as an important modulator during vessel formation by influencing endothelial cell–cell and cell–extracellular matrix contacts. Although its function was studied in the context of angiogenesis, Cgnl1’s role in establishing stable intercellular junctions may intersect with regulatory pathways potentially affected by microRNAs such as MIR548Z."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a third study, paracingulin (CGNL1) was shown to recruit the microtubule minus-end binding protein CAMSAP3 to junctional regions, thereby crucial for the organization of microtubules and overall epithelial cell architecture. This study emphasizes how junction-associated proteins not only mediate adhesion but also coordinate cytoskeletal dynamics—a process that could be subject to post-transcriptional regulation by molecules like MIR548Z."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hiroe Ohnishi, Takuo Nakahara, Kyoko Furuse, et al. "}, {"type": "b", "children": [{"type": "t", "text": "JACOP, a novel plaque protein localizing at the apical junctional complex with sequence similarity to cingulin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M402616200"}], "href": "https://doi.org/10.1074/jbc.M402616200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15292197"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15292197"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ihsan Chrifi, Dorien Hermkens, Maarten M Brandt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cgnl1, an endothelial junction complex protein, regulates GTPase mediated angiogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cardiovasc Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/cvr/cvx175"}], "href": "https://doi.org/10.1093/cvr/cvx175"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29016873"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29016873"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Arielle Flinois, Isabelle Méan, Annick Mutero-Maeda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Paracingulin recruits CAMSAP3 to tight junctions and regulates microtubule and polarized epithelial cell organization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.260745"}], "href": "https://doi.org/10.1242/jcs.260745"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37013686"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37013686"}]}]}]}
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| NCBI Gene ID | 100500856 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR548Z has 387 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for MIR548Z from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548Z gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548Z gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR548Z gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR548Z gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR548Z gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR548Z gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR548Z gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR548Z gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR548Z gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |