| HGNC Family | Non-coding RNAs |
| Name | microRNA 550a-3 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nmiR-550a-3, particularly the miR-550a-3-5p isoform, has been shown to function as a tumor suppressor in several cancers by directly targeting oncogenic signaling pathways. For instance, in multiple cancer cell types, miR-550a-3-5p suppresses cell proliferation, metastasis, and tumor sphere formation by inhibiting YAP, an established promoter of tumor progression and drug resistance. In addition, miR-550a-3-5p treatment has been demonstrated to re-sensitize BRAF inhibitor–resistant colon and melanoma cells, suggesting its potential utility as a therapeutic tool in overcoming resistance to targeted therapies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast, while miR-550a-3p is recognized for its role in the regulation of malignant tumors including non‐small cell lung cancer (NSCLC), its precise function in NSCLC progression remains to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn esophageal squamous cell carcinoma (ESCC), elevated levels of miR-550a-3 correlate with a poorer prognosis. Functional studies in ESCC cells have shown that miR-550a-3 promotes proliferation, colony formation, invasion, migration, and the epithelial-to-mesenchymal transition (EMT) process by directly targeting the nuclear factor IC (NFIC). Notably, re-expression of NFIC can attenuate these malignant behaviors, highlighting a critical miR-550a-3/NFIC regulatory axis in ESCC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond oncology, miR-550a-3p also plays a significant role in the pathogenesis of atherosclerosis. In a cellular model of vascular smooth muscle cells (HVSMCs) exposed to oxidized low-density lipoprotein (Ox-LDL), miR-550a-3p was found to inhibit the proliferation, invasion, and migration induced by thrombomodulin (TM) overexpression. The restoration of miR-550a-3p expression counteracts TM-mediated cellular effects, suggesting that the miR-550a-3p/TM axis may serve as a promising therapeutic target for atherosclerotic vascular injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Min Ho Choe, Yina Yoon, Joon Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-550a-3-5p acts as a tumor suppressor and reverses BRAF inhibitor resistance through the direct targeting of YAP."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-018-0698-3"}], "href": "https://doi.org/10.1038/s41419-018-0698-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29844307"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29844307"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "J-Z Yang, L Bian, J-G Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-550a-3p promotes non-small cell lung cancer cell proliferation and metastasis through down-regulating TIMP2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201807_15408"}], "href": "https://doi.org/10.26355/eurrev_201807_15408"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30024604"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30024604"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Huiqing Wang, Xiaoyu Shi, Shanbin Wu "}, {"type": "b", "children": [{"type": "t", "text": "miR-550a-3/NFIC plays a driving role in esophageal squamous cell cancer cells proliferation and metastasis partly through EMT process."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-020-03790-y"}], "href": "https://doi.org/10.1007/s11010-020-03790-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32567032"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32567032"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shiyuan Chen, Longfei Zhang, Benchi Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-550a-3p restores damaged vascular smooth muscle cells by inhibiting thrombomodulin in an <em>in vitro</em> atherosclerosis model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Histochem (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4081/ejh.2022.3429"}], "href": "https://doi.org/10.4081/ejh.2022.3429"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35855629"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35855629"}]}]}]}
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| Synonyms | MIR-550A-3 |
| NCBI Gene ID | 100616354 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR550A3 has 182 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for MIR550A3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR550A3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR550A3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR550A3 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR550A3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR550A3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of MIR550A3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR550A3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |