MIR5687 Gene

Name microRNA 5687
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies primarily focuses on translesion synthesis (TLS) DNA polymerases and their roles in genome stability, mutagenesis, and antibody diversification. In these reports, DNA polymerase η (POLH) is characterized as a key enzyme that bypasses DNA lesions—including UV-induced cyclobutane pyrimidine dimers—in an error‐prone manner that contributes both to somatic hypermutation of immunoglobulin genes and to the tolerance of DNA damage."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations have detailed the genetic and biochemical interactions among various TLS polymerases—such as POLη, POLι, REV1, POLζ, and POLQ—in processes that include error‐free lesion bypass, replication through damaged sites, and the regulation of mutational spectra during immunoglobulin gene hypermutation. These studies further explore how deficiencies or altered activities in these enzymes affect UV sensitivity, mutation frequencies, and ultimately cancer predisposition, underscoring the delicate balance between accurate DNA synthesis and mutagenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary studies have also linked TLS polymerase function to broader cellular outcomes such as cell cycle progression, adipocyte senescence, and metabolic regulation. These findings highlight that proper function of TLS polymerases is essential not only for maintaining genome integrity during DNA replication and repair but also for preventing metabolic disturbances and oncogenic transformation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt is important to note that throughout these abstracts there is no mention or elucidation of MIR5687. Despite the wealth of detailed information on DNA polymerase–mediated TLS pathways and their clinical relevance, none of the studies provide any insights into the function or involvement of MIR5687. Therefore, based on the current collection of literature, the function of MIR5687 remains undetermined and may require further dedicated investigation.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "T Matsuda, K Bebenek, C Masutani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Error rate and specificity of human and murine DNA polymerase eta."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2001)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/jmbi.2001.4937"}], "href": "https://doi.org/10.1006/jmbi.2001.4937"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11554790"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11554790"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Youri I Pavlov, Igor B Rogozin, Alexey P Galkin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.152126799"}], "href": "https://doi.org/10.1073/pnas.152126799"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12119399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12119399"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Tsuyoshi Ohkumo, Yuji Kondo, Masayuki Yokoi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "UV-B radiation induces epithelial tumors in mice lacking DNA polymerase eta and mesenchymal tumors in mice deficient for DNA polymerase iota."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01076-06"}], "href": "https://doi.org/10.1128/MCB.01076-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17015482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17015482"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Keiji Masuda, Rika Ouchida, Masaki Hikida, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA polymerases eta and theta function in the same genetic pathway to generate mutations at A/T during somatic hypermutation of Ig genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M611849200"}], "href": "https://doi.org/10.1074/jbc.M611849200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17449470"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17449470"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Keiji Masuda, Rika Ouchida, Masayuki Yokoi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA polymerase eta is a limiting factor for A:T mutations in Ig genes and contributes to antibody affinity maturation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Immunol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/eji.200838502"}], "href": "https://doi.org/10.1002/eji.200838502"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18825746"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18825746"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jung-Hoon Yoon, Louise Prakash, Satya Prakash "}, {"type": "b", "children": [{"type": "t", "text": "Highly error-free role of DNA polymerase eta in the replicative bypass of UV-induced pyrimidine dimers in mouse and human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0910121106"}], "href": "https://doi.org/10.1073/pnas.0910121106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19822754"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19822754"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Peter H L Krijger, Paul C M van den Berk, Niek Wit, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PCNA ubiquitination-independent activation of polymerase η during somatic hypermutation and DNA damage tolerance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2011.08.005"}], "href": "https://doi.org/10.1016/j.dnarep.2011.08.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21889916"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21889916"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Chie Kano, Fumio Hanaoka, Ji-Yang Wang "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of mice deficient in both REV1 catalytic activity and POLH reveals an unexpected role for POLH in the generation of C to G and G to C transversions during Ig gene hypermutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Immunol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/intimm/dxr109"}], "href": "https://doi.org/10.1093/intimm/dxr109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22223762"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22223762"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Wakana Ito, Masayuki Yokoi, Nobutaka Sakayoshi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stalled Polη at its cognate substrate initiates an alternative translesion synthesis pathway via interaction with REV1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Cells (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1365-2443.2011.01576.x"}], "href": "https://doi.org/10.1111/j.1365-2443.2011.01576.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22244149"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22244149"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Shuyin Li, Yaofeng Zhao, Ji-Yang Wang "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of Ig gene hypermutation in Ung(-/-)Polh(-/-) mice suggests that UNG and A:T mutagenesis pathway target different U:G lesions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2012.08.009"}], "href": "https://doi.org/10.1016/j.molimm.2012.08.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22960197"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22960197"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Rie Kanao, Masayuki Yokoi, Tsuyoshi Ohkumo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "UV-induced mutations in epidermal cells of mice defective in DNA polymerase η and/or ι."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2015.02.006"}], "href": "https://doi.org/10.1016/j.dnarep.2015.02.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25733082"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25733082"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Yih-Wen Chen, Robert A Harris, Zafer Hatahet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ablation of XP-V gene causes adipose tissue senescence and metabolic abnormalities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1506954112"}], "href": "https://doi.org/10.1073/pnas.1506954112"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26240351"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26240351"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Sabine S Lange, Junya Tomida, Karen S Boulware, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Polymerase Activity of Mammalian DNA Pol ζ Is Specifically Required for Cell and Embryonic Viability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1005759"}], "href": "https://doi.org/10.1371/journal.pgen.1005759"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26727495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26727495"}]}]}]}
NCBI Gene ID 100847019
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Predicted Functions View MIR5687's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR5687's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR5687's ARCHS4 Predicted Functions.

Functional Associations

MIR5687 has 159 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for MIR5687 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR5687 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR5687 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR5687 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR5687 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.