MIR647 Gene

HGNC Family Non-coding RNAs
Name microRNA 647
Description microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Summary
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Several studies have demonstrated that reduced miR‑647 levels are associated with enhanced metastasis, and its restoration inhibits migration and invasion by directly targeting molecules such as SRF, thereby downregulating the SRF/MYH9 axis and other metastasis‐promoting genes (e.g., ANK2, FAK, and MMPs) and consequently suppressing tumor growth and dissemination."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " In contrast, another investigation in gastric cancer reported that miR‑647 overexpression could promote cell proliferation, migration, and invasion via direct targeting of TP73, thereby suggesting an oncogenic role in this context."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond gastric cancer, miR‑647 appears to have contrasting functions in other diseases. In colorectal cancer, its upregulation has been linked to enhanced cell proliferation and migration through the targeting of NFIX."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similarly, in hepatocellular carcinoma, miR‑647 promotes proliferation, migration, and invasion by directly suppressing PTPRF and modulating downstream ERK signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Moreover, elevated miR‑647 expression in atherosclerosis samples"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "and its involvement in ovarian cancer via post‐transcriptional regulation—as illustrated by its sequestration by circ‑FAM53B leading to upregulation of oncogenic MDM2"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "—further highlight its diverse roles. In addition, preliminary data in glioma indicate that the function of miR‑647 remains to be clarified."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTaken together, these findings indicate that miR‑647 displays multifaceted, context‐dependent regulatory functions. Whether acting as a tumor suppressor or an oncogene, miR‑647 influences key cellular processes—including proliferation, migration, invasion, apoptosis, and chemoresistance—through its interactions with targets such as SRF, TP73, NFIX, and PTPRF. These contrasting roles underscore the importance of further investigation into the molecular mechanisms of miR‑647 to assess its potential as a therapeutic target in cancer and other diseases.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wenlong Cao, Weiyuan Wei, Zexu Zhan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Role of miR-647 in human gastric cancer suppression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2017.5383"}], "href": "https://doi.org/10.3892/or.2017.5383"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28098914"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28098914"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gengtai Ye, Kunzhai Huang, Jiang Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-647 Targets SRF-MYH9 Axis to Suppress Invasion and Metastasis of Gastric Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Theranostics (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/thno.20512"}], "href": "https://doi.org/10.7150/thno.20512"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28900514"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28900514"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wenlong Cao, Weiyuan Wei, Zexu Zhan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of drug resistance and metastasis of gastric cancer cells via the microRNA647-ANK2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijmm.2018.3381"}], "href": "https://doi.org/10.3892/ijmm.2018.3381"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29328428"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29328428"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiangqian Zhang, Min Zhang, Guifeng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor promoter role of miR‑647 in gastric cancer via repression of TP73."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2018.9358"}], "href": "https://doi.org/10.3892/mmr.2018.9358"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30106095"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30106095"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Shaoqing Liu, Dingding Qu, Weiping Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR‑647 and miR‑1914 promote cancer progression equivalently by downregulating nuclear factor IX in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2017.7675"}], "href": "https://doi.org/10.3892/mmr.2017.7675"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28990086"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28990086"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiangyang Ye, Rongxian Qiu, Xiongzhi He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-647 inhibits hepatocellular carcinoma cell progression by targeting protein tyrosine phosphatase receptor type F."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.2017628"}], "href": "https://doi.org/10.1080/21655979.2021.2017628"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34969357"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34969357"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "C-X Xu, L Xu, F-Z Peng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiR-647 promotes proliferation and migration of ox-LDL-treated vascular smooth muscle cells through regulating PTEN/PI3K/AKT pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201908_18756"}], "href": "https://doi.org/10.26355/eurrev_201908_18756"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31486513"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31486513"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Dan Sun, Jianing Liu, Lili Zhou "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of circular RNA circ‑FAM53B predicts adverse prognosis and accelerates the progression of ovarian cancer via the miR‑646/VAMP2 and miR‑647/MDM2 signaling pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2019.7366"}], "href": "https://doi.org/10.3892/or.2019.7366"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31638250"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31638250"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Kun Qin, Ge Tian, Guangzhong Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-647 inhibits glioma cell proliferation, colony formation and invasion by regulating HOXA9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gene Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jgm.3153"}], "href": "https://doi.org/10.1002/jgm.3153"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31881106"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31881106"}]}]}]}
Synonyms MIRN647, HSA-MIR-647
NCBI Gene ID 693232
API
Download Associations
Predicted Functions View MIR647's ARCHS4 Predicted Functions.
Co-expressed Genes View MIR647's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View MIR647's ARCHS4 Predicted Functions.

Functional Associations

MIR647 has 1,130 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for MIR647 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR647 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR647 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR647 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR647 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of MIR647 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing MIR647 from the GeneSigDB Published Gene Signatures dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of MIR647 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of MIR647 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of MIR647 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of MIR647 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of MIR647 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of MIR647 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at MIR647 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.