| HGNC Family | Non-coding RNAs |
| Name | microRNA 9-2 |
| Description | microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMIR9‐2 – one of the three independent genetic loci encoding microRNA‐9 – has emerged as a critical regulator of neural development. Studies in MIR9‐2/3 double‐mutant mice demonstrate that miR‐9 is required to modulate neural progenitor proliferation and differentiation in the developing telencephalon through fine‐tuning the expression of key transcription factors such as Foxg1, Pax6, and Meis2. In line with this, detailed promoter analyses have revealed that despite its intragenic location, MIR9‐2 is transcribed independently under the coordinated control of repressive and activating transcription factors (namely REST and CREB), establishing a feedback loop essential for neuronal differentiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of cancer, deregulation of miR‐9 – often reflecting perturbations at loci including MIR9‐2 – contributes in a context‐dependent manner to tumor progression. In gastric cancer, for example, simultaneous hypermethylation of MIR9 promoters (miR‐9‐1, miR‐9‐2, and miR‐9‐3) leads to marked downregulation of miR‐9, bolstering its proposed tumor suppressor role. By contrast, in several other malignancies such as esophageal squamous cell carcinoma, oral squamous cell carcinoma, and certain breast tumors, aberrantly high levels of miR‐9 are associated with enhanced metastatic potential through the direct targeting of epithelial adhesion molecules and induction of epithelial–mesenchymal transition. In addition, miR‐9 has been implicated in the regulation of nuclear long non‐coding RNAs (e.g. MALAT1) as well as in mediating tumor cell sensitivity to chemoradiation, with further studies revealing that targeting key factors (such as UHRF1, ANO1, and components of the IL‐6/JAK/STAT3 signaling cascade) underlies its multifaceted roles in growth, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond neurogenesis and oncogenesis, MIR9‐2–derived miR‐9 is increasingly recognized for its involvement in diverse pathological processes. In diabetic cardiomyopathy, for instance, miR‐9 targets an AU‐rich RNA‐binding protein (ELAVL1) to mitigate inflammation‐induced cardiomyocyte pyroptosis. Similarly, in certain hematologic malignancies such as acute myeloid leukemia, miR‐9 exerts tumor‐suppressive effects by inhibiting proliferative drivers. Its functional spectrum also extends to the modulation of hormone receptor status in breast cancer, the enhancement of radiosensitivity in non‐small cell lung cancer, and even the regulation of stress‐ and inflammation‐related pathways in mood disorders. Moreover, recent evidence indicates that miR‐9 packaged within exosomes from HPV‐positive head and neck tumors can reprogram tumor‐associated macrophages toward a proinflammatory, radiosensitive phenotype. Collectively, these studies underscore the versatile and context‐dependent nature of MIR9‐2 regulation, highlighting its promise as both a diagnostic biomarker and a therapeutic target across a wide spectrum of human diseases."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Pietro Laneve, Ubaldo Gioia, Anastasia Andriotto, et al. 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| Synonyms | MIR-9-2, HSA-MIR-9-2, MIRNA9-2, MIRN9-2 |
| NCBI Gene ID | 407047 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR9-2 has 886 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.
Click the + buttons to view associations for MIR9-2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of MIR9-2 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR9-2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR9-2 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR9-2 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR9-2 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR9-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR9-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing MIR9-2 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with MIR9-2 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with MIR9-2 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing MIR9-2 from the GeneSigDB Published Gene Signatures dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with MIR9-2 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR9-2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR9-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by MIR9-2 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of MIR9-2 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by MIR9-2 gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR9-2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| WikiPathways Pathways 2014 | pathways involving MIR9-2 protein from the Wikipathways Pathways 2014 dataset. | |