| HGNC Family | Non-coding RNAs |
| Name | mir-99a-let-7c cluster host gene |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMIR99AHG is a long noncoding RNA that serves as the host gene for a microRNA cluster, with its function initially remaining elusive in diseases such as acute megakaryoblastic leukemia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Recent evidence, however, implicates MIR99AHG in several key regulatory processes in both oncologic and infectious contexts.\n \nIn lung adenocarcinoma, MIR99AHG acts as a noncoding tumor suppressor. It is downregulated in tumor tissues partly due to copy number deletions, and its reduced expression correlates with poor patient survival. Functionally, MIR99AHG suppresses cell proliferation and metastasis while promoting autophagy by interacting with ANXA2 to accelerate ATG16L+ vesicle biogenesis, and through the coordinated action of its co-expressed miR-99a, which targets mTOR."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n \nIn the context of tuberculosis infection, MIR99AHG—termed lincRNA-MIR99AHG in this setting—is upregulated upon IL-4/IL-13 stimulation in macrophages. However, its expression is downregulated upon Mycobacterium tuberculosis infection, and experimental knockdown leads to reduced intracellular mycobacterial growth and diminished pro-inflammatory cytokine production. These findings suggest that MIR99AHG acts as a positive regulator of inflammation and macrophage polarization that ultimately promotes bacterial survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n \nBy contrast, in colorectal cancer, MIR99AHG seems to play a pro-metastatic role. It is highly expressed in invasive cancer cells and metastatic tumors, where it binds to and stabilizes the splicing factor PTBP1. This interaction alters the alternative splicing of SMARCA1 pre-mRNA, favoring the production of the SMARCA1-L isoform that lacks the suppressive effects on cell migration, invadopodia formation, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n \nWhile its molecular functions have been more clearly defined in lung adenocarcinoma, tuberculosis, and colorectal cancer, investigations in breast"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "and endometrial cancers"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "indicate that additional studies are needed to fully elucidate the diverse roles of MIR99AHG in tumorigenesis and immune modulation.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stephan Emmrich, Alexandra Streltsov, Franziska Schmidt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1476-4598-13-171"}], "href": "https://doi.org/10.1186/1476-4598-13-171"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25027842"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25027842"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chencheng Han, Hong Li, Zhifei Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MIR99AHG is a noncoding tumor suppressor gene in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03715-7"}], "href": "https://doi.org/10.1038/s41419-021-03715-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33931593"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33931593"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Lorna Gcanga, Ousman Tamgue, Mumin Ozturk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Host-Directed Targeting of LincRNA-MIR99AHG Suppresses Intracellular Growth of "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Mycobacterium tuberculosis"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acid Ther (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/nat.2022.0009"}], "href": "https://doi.org/10.1089/nat.2022.0009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35895506"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35895506"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Danxiu Li, Xin Wang, Hui Miao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA MIR99AHG directs alternative splicing of "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "SMARCA1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " by PTBP1 to enable invadopodia formation in colorectal cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Signal (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/scisignal.adh4210"}], "href": "https://doi.org/10.1126/scisignal.adh4210"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37725664"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37725664"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Rong Guo, Yonghui Su, Qi Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00478-derived novel cytoplasmic lncRNA LacRNA stabilizes PHB2 and suppresses breast cancer metastasis via repressing MYC targets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12967-023-03967-1"}], "href": "https://doi.org/10.1186/s12967-023-03967-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36782197"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36782197"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yingyi Feng, Yongshun Dong, Boqi Rao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel LINC00478 serves as a tumor suppressor in endometrial carcinoma progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cancer Res Clin Oncol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00432-023-05282-0"}], "href": "https://doi.org/10.1007/s00432-023-05282-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37603104"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37603104"}]}]}]}
|
| Synonyms | C21ORF35, LINC00478, FLJ38295, MONC, C21ORF34 |
| NCBI Gene ID | 388815 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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MIR99AHG has 1,581 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 32 datasets.
Click the + buttons to view associations for MIR99AHG from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of MIR99AHG gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of MIR99AHG gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of MIR99AHG gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR99AHG gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of MIR99AHG gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR99AHG gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of MIR99AHG gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CTD Gene-Disease Associations | diseases associated with MIR99AHG gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with MIR99AHG gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores | diseases associated with MIR99AHG gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR99AHG gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of MIR99AHG gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of MIR99AHG gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GAD Gene-Disease Associations | diseases associated with MIR99AHG gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing MIR99AHG from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of MIR99AHG gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of MIR99AHG gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of MIR99AHG gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of MIR99AHG gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of MIR99AHG gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of MIR99AHG gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of MIR99AHG gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with MIR99AHG gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with MIR99AHG gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| HuBMAP Azimuth Cell Type Annotations | cell types associated with MIR99AHG gene from the HuBMAP Azimuth Cell Type Annotations dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with MIR99AHG gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of MIR99AHG gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of MIR99AHG gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain MIR99AHG protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at MIR99AHG gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of MIR99AHG gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of MIR99AHG protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |