NALF2 Gene

Name NALCN channel auxiliary factor 2
Description This gene encodes a product belonging to a family of proteins with unknown function. The presence of two transmembrane domains suggests that this protein is a multi-pass membrane protein. [provided by RefSeq, Sep 2011]
Summary
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Its expression is tightly regulated during embryogenesis and extends to non‐neuronal tissues such as the developing gut and retina, underscoring its broad developmental impact."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its developmental functions, RGMa exerts critical roles in the mature central nervous system and the immune system. In various experimental models of neurological disorders—including multiple sclerosis, spinal cord injury, and even amyotrophic lateral sclerosis—RGMa contributes to axonal retraction, inhibition of regeneration, and neuroinflammation by modulating T‐cell adhesion, dendritic cell activation, and leukocyte chemotaxis. Molecular mechanisms underlying these effects involve the selective engagement of distinct type II BMP receptors and downstream effectors such as Rho kinase, with RGMa–neogenin interactions proving central to its signaling. Moreover, its binding domain has been precisely mapped, and the disruption of RGMa signaling (for example, with neutralizing antibodies) alleviates inflammatory responses and promotes functional recovery."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "19"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its roles in neurodevelopment and CNS inflammation, RGMa is increasingly implicated in a variety of diverse pathophysiological processes. Altered RGMa expression affects adult neurogenesis and synaptogenesis, while its modulation in non‐neuronal tissues has been linked to skeletal muscle cell fusion, vascular smooth muscle cell dedifferentiation in atherosclerosis, and even tumor suppressor activity in breast cancer. Recent evidence also suggests that RGMa may regulate neuronal energy metabolism under ischemia–reperfusion injury by influencing glycolytic flux and protein deubiquitination processes. Collectively, these multifaceted actions highlight RGMa as an attractive therapeutic target for a broad spectrum of disorders ranging from neuroinflammatory and neurodegenerative diseases to aberrant tissue remodeling and metabolic dysregulation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "20", "end_ref": "29"}]}, {"type": "t", "text": ""}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jens Schmidtmer, Dieter Engelkamp "}, {"type": "b", "children": [{"type": "t", "text": "Isolation and expression pattern of three mouse homologues of chick Rgm."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s1567-133x(03)00144-3"}], "href": "https://doi.org/10.1016/s1567-133x(03"}, {"type": "t", "text": "00144-3) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14678836"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14678836"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Henriette Brinks, Sabine Conrad, Johannes Vogt, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of RGMA improves ischemic stroke via Reprogramming of Neuronal Metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Free Radic Biol Med (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.freeradbiomed.2024.03.020"}], "href": "https://doi.org/10.1016/j.freeradbiomed.2024.03.020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38556067"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38556067"}]}]}]}
NCBI Gene ID 27112
API
Download Associations
Predicted Functions View NALF2's ARCHS4 Predicted Functions.
Co-expressed Genes View NALF2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View NALF2's ARCHS4 Predicted Functions.

Functional Associations

NALF2 has 1,108 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for NALF2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of NALF2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of NALF2 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with NALF2 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving NALF2 gene from the curated GO Biological Process Annotations2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by NALF2 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of NALF2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of NALF2 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with NALF2 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of NALF2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of NALF2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of NALF2 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of NALF2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of NALF2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of NALF2 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with NALF2 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.