NDFIP2-AS1 Gene

Name NDFIP2 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe scientific abstracts collectively elucidate the essential role of cyclin G–associated kinase (GAK) in mediating clathrin‐dependent endocytosis—a process critical for cellular homeostasis and development. GAK functions as a key cochaperone for Hsc70, ensuring the efficient uncoating of clathrin‐coated vesicles; without its activity, cells are unable to properly recycle clathrin, leading to profound trafficking defects that compromise embryogenesis and adult tissue function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nDisruption or inhibition of GAK—as observed with GAK knockout models and in the context of therapeutic EGFR inhibitors such as gefitinib—results in severe pathophysiological outcomes, including respiratory dysfunction due to altered alveolar cell architecture, highlighting that GAK is as critical as EGFR signaling in maintaining pulmonary integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n\nIn addition, abrogation of clathrin-mediated trafficking via deletion of GAK induces aberrant cell cycle regulation, characterized by centrosome overduplication coupled with growth arrest and senescence; these findings underscore the broader impact of impaired vesicular trafficking on cellular proliferation and genome stability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n\nFinally, tissue-specific deletion studies in podocytes reveal that loss of GAK perturbs intracellular calcium handling and aberrantly activates calpain proteases, driving podocyte damage, glomerular sclerosis, and progressive kidney failure—a cascade that can be mitigated through calpain inhibition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Dong-Won Lee, Xiaohong Zhao, Yang-In Yim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Essential role of cyclin-G-associated kinase (Auxilin-2) in developing and mature mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e07-11-1115"}], "href": "https://doi.org/10.1091/mbc.e07-11-1115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18434600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18434600"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Bum-Chan Park, Yang-In Yim, Xiaohong Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The clathrin-binding and J-domains of GAK support the uncoating and chaperoning of clathrin by Hsc70 in the brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.171058"}], "href": "https://doi.org/10.1242/jcs.171058"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26345367"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26345367"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hiroe Tabara, Yoko Naito, Akihiko Ito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neonatal lethality in knockout mice expressing the kinase-dead form of the gefitinib target GAK is caused by pulmonary dysfunction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0026034"}], "href": "https://doi.org/10.1371/journal.pone.0026034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22022498"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22022498"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maciej B Olszewski, Panagiotis Chandris, Bum-Chan Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Disruption of clathrin-mediated trafficking causes centrosome overduplication and senescence."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Traffic (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/tra.12132"}], "href": "https://doi.org/10.1111/tra.12132"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24138026"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24138026"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xuefei Tian, Kazunori Inoue, Yan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibiting calpain 1 and 2 in cyclin G associated kinase-knockout mice mitigates podocyte injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JCI Insight (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/jci.insight.142740"}], "href": "https://doi.org/10.1172/jci.insight.142740"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33208557"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33208557"}]}]}]}
NCBI Gene ID 100874208
API
Download Associations
Predicted Functions View NDFIP2-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View NDFIP2-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View NDFIP2-AS1's ARCHS4 Predicted Functions.

Functional Associations

NDFIP2-AS1 has 168 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for NDFIP2-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of NDFIP2-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of NDFIP2-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of NDFIP2-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of NDFIP2-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of NDFIP2-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of NDFIP2-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.