| Name | NEGR1 intronic transcript 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided abstracts focus on the role of type II transmembrane serine proteases (TTSPs) in viral infection processes. One study demonstrates that proteases such as TMPRSS11A are capable of cleaving and activating viral glycoproteins—including influenza virus hemagglutinin (HA) and the Middle East respiratory syndrome coronavirus spike protein (MERS‑S)—which is essential for viral entry and spread."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA second study characterizes the expression and redundancy of proteases within the HAT/DESC subfamily, showing that these enzymes, including TMPRSS11A, are not critical for normal development or survival in mice under baseline conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " This work emphasizes the coordinated expression of these proteases but does not attribute any direct regulatory functions to other molecular entities.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, neither abstract provides any information regarding NEGR1‑IT1. Although NEGR1‑IT1 may be of interest as a potential regulatory noncoding RNA in other contexts, these studies do not report any role or function of NEGR1‑IT1 in relation to the activation of viral glycoproteins or the regulatory mechanisms of TTSP proteases. Further research would be required to clarify any connection between NEGR1‑IT1 and these viral or protease-related processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}, {"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Pawel Zmora, Markus Hoffmann, Heike Kollmus, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TMPRSS11A activates the influenza A virus hemagglutinin and the MERS coronavirus spike protein and is insensitive against blockade by HAI-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.RA118.001273"}], "href": "https://doi.org/10.1074/jbc.RA118.001273"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29976755"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29976755"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Katiuchia Uzzun Sales, John P Hobson, Rebecca Wagenaar-Miller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression and genetic loss of function analysis of the HAT/DESC cluster proteases TMPRSS11A and HAT."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0023261"}], "href": "https://doi.org/10.1371/journal.pone.0023261"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21853097"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21853097"}]}]}]}
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| NCBI Gene ID | 100852409 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NEGR1-IT1 has 178 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for NEGR1-IT1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of NEGR1-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of NEGR1-IT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of NEGR1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of NEGR1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of NEGR1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of NEGR1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of NEGR1-IT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of NEGR1-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of NEGR1-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Sanger Dependency Map Cancer Cell Line Proteomics | cell lines associated with NEGR1-IT1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset. | |