| Name | NEXN antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe long noncoding RNA NEXN‐AS1 has been shown to play a critical regulatory role in cardiovascular biology by modulating the expression of the actin‐binding protein NEXN. Reduced levels of both NEXN-AS1 and NEXN have been observed in human atherosclerotic plaques, and mechanistic studies indicate that NEXN-AS1 interacts with the chromatin remodeler BAZ1A at the NEXN promoter to upregulate its expression. Enhanced NEXN-AS1 levels lead to the inhibition of TLR4 oligomerization and NF-κB signaling, which in turn diminishes the expression of adhesion molecules and inflammatory cytokines as well as monocyte adhesion to endothelial cells. These findings are supported by both in vitro and in vivo experiments, including studies in ApoE-deficient mice where decreased NEXN levels were associated with aggravated atherosclerosis, suggesting that both NEXN-AS1 and its target gene NEXN may serve as promising therapeutic targets for atherosclerosis-related disorders."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Disruptions in the structural integrity of NEXN-AS1 also appear to contribute to lung carcinogenesis. A large-scale meta-analysis of genome-wide association studies identified a novel risk single nucleotide polymorphism (rs114020893) located in the NEXN-AS1 region at 1p31.1 that is significantly associated with an increased risk for lung cancer. In silico analyses suggest that this SNP alters the secondary structure of NEXN-AS1, implicating it in the modulation of lung cancer susceptibility through mechanisms that remain to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yan-Wei Hu, Feng-Xia Guo, Yuan-Jun Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA NEXN-AS1 mitigates atherosclerosis by regulating the actin-binding protein NEXN."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI98230"}], "href": "https://doi.org/10.1172/JCI98230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30589415"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30589415"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hua Yuan, Hongliang Liu, Zhensheng Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep34234"}], "href": "https://doi.org/10.1038/srep34234"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27713484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27713484"}]}]}]}
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| Synonyms | C1ORF118 |
| Proteins | NEAS1_HUMAN |
| NCBI Gene ID | 374987 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NEXN-AS1 has 753 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for NEXN-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of NEXN-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of NEXN-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of NEXN-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of NEXN-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing NEXN-AS1 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of NEXN-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of NEXN-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of NEXN-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of NEXN-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of NEXN-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NEXN-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with NEXN-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of NEXN-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of NEXN-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |