| HGNC Family | Basic leucine zipper proteins |
| Name | nuclear factor, interleukin 3 regulated |
| Description | The protein encoded by this gene is a transcriptional regulator that binds as a homodimer to activating transcription factor (ATF) sites in many cellular and viral promoters. The encoded protein represses PER1 and PER2 expression and therefore plays a role in the regulation of circadian rhythm. Three transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Feb 2014] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNFIL3 (also known as E4BP4) is emerging as a multifaceted transcriptional regulator that critically modulates immune and inflammatory responses. In T cells, for example, NFIL3 – which is up‐regulated under glucocorticoid stimulation in a Ca²⁺‐dependent manner – is associated with apoptosis of sensitive lymphoid cells, while in systemic lupus erythematosus it is overexpressed in CD4⁺ T cells to inhibit activation via epigenetic suppression of CD40L. Moreover, NFIL3 limits T follicular helper cell differentiation through recruitment of histone deacetylase and Polycomb repressive complexes and is essential for proper natural killer cell development, with its posttranslational modifications influencing Notch1 target regulation. In respiratory epithelial cells, NFIL3 mediates interleukin‑17A–dependent improvements in glucocorticoid sensitivity, and its elevated expression is also observed in autoimmune inflammatory settings such as rheumatoid arthritis and Kawasaki disease, as well as in atherosclerosis, underscoring its role in modulating aberrant inflammatory cytokine networks."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "10"}]}, {"type": "t", "text": "\n\nNFIL3 also exerts significant control over oncogenic processes by reconfiguring gene expression programs that affect cell survival, invasion, and chemoresistance. In several cancer models—including lung adenocarcinoma, choriocarcinoma, and osteosarcoma—NFIL3 has been shown to act either as a transcriptional repressor (for instance, by restricting FOXO access to pro‑apoptotic genes such as TRAIL, FAS, and GADD45 isoforms via recruitment of chromatin modifiers) or as an activator (by up‐regulating targets like the prion protein [PRNP]). In leukemia cells, NFIL3 is implicated downstream of glucocorticoid receptor signaling to regulate survival genes (such as RCAN1‑1), while it also represses tumor suppressors like RASSF8 in breast cancer. Taken together, these findings illustrate that NFIL3 modulates distinct transcriptional programs that can tip the balance between apoptosis and survival in tumor cells, with additional structural studies revealing its binding preference for specific DNA motifs and the deleterious impact of mutations on this activity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "20"}]}, {"type": "t", "text": "\n\nBeyond immune regulation and cancer, NFIL3 plays important roles in metabolic homeostasis, circadian control, and neuro‑cardiac protection. In the liver, NFIL3 represses FGF21 expression through G9a‐dependent histone methylation, thereby influencing metabolism during feeding–fasting cycles, while changes in the commensal gut microbiota can alter its rhythmic expression to affect obesity and insulin resistance. In addition, NFIL3 confers neuroprotection in models of amyotrophic lateral sclerosis and supports cardiomyocyte survival and proper embryonic heart development. Finally, genome‐wide association studies have identified nominal links between polymorphisms in NFIL3 and neurodevelopmental conditions, highlighting its broader importance in both metabolic and neuronal signaling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "21", "end_ref": "26"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Saul J Priceman, Jonathan D Kirzner, Laura J Nary, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "E4BP4 overexpression: a protective mechanism in CD4+ T cells from SLE patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Autoimmun (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jaut.2013.01.004"}], "href": "https://doi.org/10.1016/j.jaut.2013.01.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23340290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23340290"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jinghua Yin, Jian Zhang, Qianjin Lu "}, {"type": "b", "children": [{"type": "t", "text": "The role of basic leucine zipper transcription factor E4BP4 in the immune system and immune-mediated diseases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Immunol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clim.2017.03.013"}], "href": "https://doi.org/10.1016/j.clim.2017.03.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28365317"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28365317"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tomasz Kostrzewski, Aaron J Borg, Yiran Meng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Multiple Levels of Control Determine How E4bp4/Nfil3 Regulates NK Cell Development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1700981"}], "href": "https://doi.org/10.4049/jimmunol.1700981"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29311361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29311361"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhixia Wang, Changming Wang, Yanni Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E4BP4 facilitates glucocorticoid sensitivity of human bronchial epithelial cells via down-regulation of glucocorticoid receptor-beta."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellimm.2018.08.015"}], "href": "https://doi.org/10.1016/j.cellimm.2018.08.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30153899"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30153899"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zijun Wang, Ming Zhao, Jinghua Yin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E4BP4-mediated inhibition of T follicular helper cell differentiation is compromised in autoimmune diseases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI129018"}], "href": "https://doi.org/10.1172/JCI129018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32191636"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32191636"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Juping Du, Liyuan Zheng, Shuaishuai Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NFIL3 and its immunoregulatory role in rheumatoid arthritis patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2022.950144"}], "href": "https://doi.org/10.3389/fimmu.2022.950144"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36439145"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36439145"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Guang-Gui Zeng, Jing Zhou, Wan-Li Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Potential Role of NFIL3 in Atherosclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Probl Cardiol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cpcardiol.2023.102096"}], "href": "https://doi.org/10.1016/j.cpcardiol.2023.102096"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37741601"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37741601"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Li Chen, Zhiyang Shangguan, Zeya Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NFIL3 aggravates human coronary artery endothelial cell injury by promoting ITGAM transcription in Kawasaki disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hematology (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/16078454.2023.2277502"}], "href": "https://doi.org/10.1080/16078454.2023.2277502"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37933872"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37933872"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Fuyong Qiang, Dan Xuan, Jinghua Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of NFIL3 modulates the AMPK pathway to suppress excessive cell proliferation, inflammation, and migration in rheumatoid arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Rheum Dis (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/1756-185X.15287"}], "href": "https://doi.org/10.1111/1756-185X.15287"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39175280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39175280"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Stewart T G Burgess, Cuicui Shen, Laura A Ferguson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of adjacent binding sites for the YY1 and E4BP4 transcription factors in the ovine PrP (Prion) gene promoter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M807065200"}], "href": "https://doi.org/10.1074/jbc.M807065200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19129193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19129193"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Leighcraft A Shakes, Hansen Du, Hope M Wolf, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Using BAC transgenesis in zebrafish to identify regulatory sequences of the amyloid precursor protein gene in humans."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2164-13-451"}], "href": "https://doi.org/10.1186/1471-2164-13-451"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22947103"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22947103"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Megan Keniry, Maira M Pires, Sarah Mense, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Survival factor NFIL3 restricts FOXO-induced gene expression in cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.214049.113"}], "href": "https://doi.org/10.1101/gad.214049.113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23630076"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23630076"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "G Jonatan Saenz, Rebeka Hovanessian, Andrew D Gisis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Glucocorticoid-mediated co-regulation of RCAN1-1, E4BP4 and BIM in human leukemia cells susceptible to apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2015.06.106"}], "href": "https://doi.org/10.1016/j.bbrc.2015.06.106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26102033"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26102033"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Zheng Peng, Chun Zhang, Wenjun Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The STAT3/NFIL3 signaling axis-mediated chemotherapy resistance is reversed by Raddeanin A via inducing apoptosis in choriocarcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.26362"}], "href": "https://doi.org/10.1002/jcp.26362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29215740"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29215740"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Isai Pratha Karthik, Pavitra Desai, Sudarkodi Sukumar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E4BP4/NFIL3 modulates the epigenetically repressed RAS effector RASSF8 function through histone methyltransferases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.RA117.000623"}], "href": "https://doi.org/10.1074/jbc.RA117.000623"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29467226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29467226"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Shin-Chih Lin, Chia-Hung Lin, Nien-Chu Shih, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cellular prion protein transcriptionally regulated by NFIL3 enhances lung cancer cell lamellipodium formation and migration through JNK signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-019-0994-0"}], "href": "https://doi.org/10.1038/s41388-019-0994-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31477838"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31477838"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Jiaxing Xu, Gongping Xu, Tingxin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NFIL3 Acts as a Nuclear Factor to Increase Osteosarcoma Progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2019/4068521"}], "href": "https://doi.org/10.1155/2019/4068521"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31886210"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31886210"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Liang Wang, Peifen Li, Xueying Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The role of basic leucine zipper transcription factor E4BP4 in cancer: a review and update."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-023-09079-9"}], "href": "https://doi.org/10.1007/s11033-023-09079-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38193973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38193973"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Sizhuo Chen, Ming Lei, Ke Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for specific DNA sequence recognition by the transcription factor NFIL3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jbc.2024.105776"}], "href": "https://doi.org/10.1016/j.jbc.2024.105776"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38382670"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38382670"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Jessica Lasky-Su, Richard J L Anney, Benjamin M Neale, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet B Neuropsychiatr Genet (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.b.30869"}], "href": "https://doi.org/10.1002/ajmg.b.30869"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18937294"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18937294"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Yi-Jiun Weng, Dennis Jine-Yuan Hsieh, Wei-Wen Kuo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "E4BP4 is a cardiac survival factor and essential for embryonic heart development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-010-0417-6"}], "href": "https://doi.org/10.1007/s11010-010-0417-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20186462"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20186462"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Xin Tong, Deqiang Zhang, Katie Buelow, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Recruitment of histone methyltransferase G9a mediates transcriptional repression of Fgf21 gene by E4BP4 protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.433482"}], "href": "https://doi.org/10.1074/jbc.M112.433482"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23283977"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23283977"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "So-ichi Tamai, Keisuke Imaizumi, Nobuhiro Kurabayashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuroprotective role of the basic leucine zipper transcription factor NFIL3 in models of amyotrophic lateral sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M113.524389"}], "href": "https://doi.org/10.1074/jbc.M113.524389"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24280221"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24280221"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Bharath Kumar Velmurugan, Ruey-Lin Chang, Shibu Marthandam Asokan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A minireview of E4BP4/NFIL3 in heart failure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.26790"}], "href": "https://doi.org/10.1002/jcp.26790"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29856483"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29856483"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Masato Kubo "}, {"type": "b", "children": [{"type": "t", "text": "Diurnal Rhythmicity Programs of Microbiota and Transcriptional Oscillation of Circadian Regulator, NFIL3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2020.552188"}], "href": "https://doi.org/10.3389/fimmu.2020.552188"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33013924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33013924"}]}]}]}
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| Synonyms | IL3BP1, E4BP4, NFIL3A, NF-IL3A |
| Proteins | NFIL3_HUMAN |
| NCBI Gene ID | 4783 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NFIL3 has 10,729 functional associations with biological entities spanning 9 categories (molecular profile, organism, chemical, functional term, phrase or reference, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 121 datasets.
Click the + buttons to view associations for NFIL3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of NFIL3 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of NFIL3 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of NFIL3 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of NFIL3 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of NFIL3 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of NFIL3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with NFIL3 protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with NFIL3 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of NFIL3 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of NFIL3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of NFIL3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of NFIL3 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing NFIL3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing NFIL3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with NFIL3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with NFIL3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of NFIL3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with NFIL3 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with NFIL3 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with NFIL3 gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of NFIL3 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by NFIL3 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores | diseases associated with NFIL3 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with NFIL3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with NFIL3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with NFIL3 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with NFIL3 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at NFIL3 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of NFIL3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of NFIL3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing NFIL3 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with NFIL3 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with NFIL3 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with NFIL3 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing NFIL3 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of NFIL3 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving NFIL3 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving NFIL3 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving NFIL3 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing NFIL3 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing NFIL3 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing NFIL3 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by NFIL3 gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by NFIL3 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by NFIL3 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of NFIL3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of NFIL3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of NFIL3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with NFIL3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of NFIL3 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of NFIL3 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with NFIL3 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by NFIL3 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for NFIL3 protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of NFIL3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of NFIL3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of NFIL3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of NFIL3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of NFIL3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with NFIL3 gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of NFIL3 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of NFIL3 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of NFIL3 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of NFIL3 gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing NFIL3 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain NFIL3 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by NFIL3 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting NFIL3 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of NFIL3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by NFIL3 gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of NFIL3 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of NFIL3 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| NURSA Protein Complexes | protein complexs containing NFIL3 protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for NFIL3 from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of NFIL3 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of NFIL3 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving NFIL3 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving NFIL3 protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with NFIL3 protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| Reactome Pathways 2024 | pathways involving NFIL3 protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NFIL3 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NFIL3 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NFIL3 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of NFIL3 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of NFIL3 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at NFIL3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of NFIL3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of NFIL3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of NFIL3 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs | drug perturbations changing phosphorylation of NFIL3 protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs dataset. | |
| SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands | ligand (protein) perturbations changing phosphorylation of NFIL3 protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands dataset. | |
| Tabula Sapiens Gene-Cell Associations | cell types with high or low expression of NFIL3 gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of NFIL3 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of NFIL3 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of NFIL3 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of NFIL3 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of NFIL3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of NFIL3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of NFIL3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of NFIL3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with NFIL3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with NFIL3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2014 | pathways involving NFIL3 protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving NFIL3 protein from the WikiPathways Pathways 2024 dataset. | |