NHERF4 Gene

Name NHERF family PDZ scaffold protein 4
Description Guanylyl cyclase C (GCC, or GUCY2C; MIM 601330) produces cGMP following the binding of either endogenous ligands or heat-stable enterotoxins secreted by E. coli and other enteric bacteria. Activation of GCC initiates a signaling cascade that leads to phosphorylation of the cystic fibrosis transmembrane conductance regulator (CFTR; MIM 602421), followed by a net efflux of ions and water into the intestinal lumen. IKEPP is a regulatory protein that associates with GCC and regulates the amount of cGMP produced following receptor stimulation (Scott et al., 2002 [PubMed 11950846]).[supplied by OMIM, Mar 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNHERF4, also known as IKEPP, has emerged as a key PDZ domain scaffold protein in the regulation of cellular signaling in intestinal epithelia. In studies focused on gastrointestinal function, IKEPP was shown to associate with the COOH terminus of the guanylyl cyclase C (GCC) receptor, where its binding attenuated the activation of GCC by bacterial heat-stable enterotoxins. This effect indicates that NHERF4 plays a regulatory role in modulating receptor catalytic activity, a finding that has important implications for understanding the mechanisms underlying secretory diarrhea."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Dissecting its role in epithelial transport, NHERF4 has been demonstrated to interact directly with key transporters. In intestinal brush border studies, NHERF4 bound to the F2 region of NHE3, where its expression was associated with enhanced NHE3 activity and increased plasma membrane localization upon elevation of intracellular Ca²⁺. In another related study, the direct interaction of NHERF4 with SLC26A3 via its third PDZ domain was found to induce rapid internalization of SLC26A3 from the plasma membrane, leading to a decrease in anion exchange activity. These findings jointly suggest that NHERF4 critically modulates transporter function and composition, thereby regulating luminal fluidity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Expanding its functional repertoire beyond the gastrointestinal tract, NHERF4 interacts with the prostacyclin IP receptor in vascular endothelial cells. Here, binding via its PDZ domains facilitates a dynamic association that is enhanced by receptor agonist-induced, protein kinase-mediated phosphorylation, ultimately promoting the receptor’s functional expression and cAMP generation. These interactions support effective endothelial cell migration and angiogenesis, highlighting NHERF4’s importance in vascular repair and hemostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Robert O Scott, William R Thelin, Sharon L Milgram "}, {"type": "b", "children": [{"type": "t", "text": "A novel PDZ protein regulates the activity of guanylyl cyclase C, the heat-stable enterotoxin receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M202434200"}], "href": "https://doi.org/10.1074/jbc.M202434200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11950846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11950846"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Nicholas C Zachos, Caleb Hodson, Olga Kovbasnjuk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elevated intracellular calcium stimulates NHE3 activity by an IKEPP (NHERF4) dependent mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000185553"}], "href": "https://doi.org/10.1159/000185553"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19088451"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19088451"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ji Hyun Lee, Joo Hyun Nam, Joonhee Park, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of SLC26A3 activity by NHERF4 PDZ-mediated interaction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Signal (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellsig.2012.05.010"}], "href": "https://doi.org/10.1016/j.cellsig.2012.05.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22627094"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22627094"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Helen M Reid, Elizebeth C Turner, Eamon P Mulvaney, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interaction of the human prostacyclin receptor and the NHERF4 family member intestinal and kidney enriched PDZ protein (IKEPP)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbamcr.2012.07.015"}], "href": "https://doi.org/10.1016/j.bbamcr.2012.07.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22884631"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22884631"}]}]}]}
NCBI Gene ID 79849
API
Download Associations
Predicted Functions View NHERF4's ARCHS4 Predicted Functions.
Co-expressed Genes View NHERF4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View NHERF4's ARCHS4 Predicted Functions.

Functional Associations

NHERF4 has 1,070 functional associations with biological entities spanning 4 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for NHERF4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of NHERF4 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of NHERF4 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of NHERF4 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing NHERF4 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with NHERF4 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving NHERF4 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing NHERF4 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by NHERF4 gene from the curated GO Molecular Function Annotations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of NHERF4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of NHERF4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Reactome Pathways 2024 pathways involving NHERF4 protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of NHERF4 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of NHERF4 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of NHERF4 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of NHERF4 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with NHERF4 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.