| Name | NELL2 interacting cell ontogeny regulator 1 |
| Description | Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and spermatogenesis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMitochondrial function and integrity are maintained by a series of tightly regulated proteolytic events in which specific protein complexes, such as the m‐AAA proteases, play a central role. These proteases—composed of subunits including paraplegin, AFG3L1, and AFG3L2—mediate the processing of dynamin‐related GTPases like OPA1, thereby modulating mitochondrial morphology and bioenergetics. Differential subunit composition of these complexes confers distinct substrate specificities and proteolytic efficiencies, an observation underscoring the evolutionary divergence in mitochondrial protein quality control mechanisms."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nDysfunction in these mitochondrial proteolytic systems is intimately linked to neurodegenerative phenotypes. In particular, defective mitochondrial processing is associated with axonal degeneration observed in disorders such as hereditary spastic paraplegia. Aberrant activity leads to impaired respiratory complex stability, mitochondrial DNA loss, and eventual neuronal demise, while additional players such as the NAD+‐consuming enzyme SARM1 further modulate the pace and extent of neurodegeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementing these mitochondrial-centered mechanisms, recent studies have begun to illuminate the function of a short, evolutionarily conserved secreted micropeptide—NICOL1 (also referred to as C4ORF48 or Cf48). NICOL1 is expressed abundantly in the brain during cortical and cerebellar development, suggesting a role as a novel neuropeptide that may contribute to fine-tuning neuronal development and function. In parallel, NICOL1 expression in peripheral tissues and its ability to interact with mRNAs of pro-fibrotic genes implicate it in the promotion of renal fibrosis, offering insights into its broader contribution to both neurodevelopmental disorders and chronic kidney disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stéphane Duvezin-Caubet, Mirko Koppen, Johannes Wagener, et al. "}, {"type": "b", "children": [{"type": "t", "text": "OPA1 processing reconstituted in yeast depends on the subunit composition of the m-AAA protease in mitochondria."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e07-02-0164"}], "href": "https://doi.org/10.1091/mbc.e07-02-0164"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17615298"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17615298"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Paola Martinelli, Veronica La Mattina, Andrea Bernacchia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic interaction between the m-AAA protease isoenzymes reveals novel roles in cerebellar degeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddp124"}], "href": "https://doi.org/10.1093/hmg/ddp124"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19289403"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19289403"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mirko Koppen, Florian Bonn, Sarah Ehses, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Autocatalytic processing of m-AAA protease subunits in mitochondria."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e09-03-0218"}], "href": "https://doi.org/10.1091/mbc.e09-03-0218"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19656850"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19656850"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Giuseppe Mancuso, Esther Barth, Pietro Crivello, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alternative splicing of Spg7, a gene involved in hereditary spastic paraplegia, encodes a variant of paraplegin targeted to the endoplasmic reticulum."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0036337"}], "href": "https://doi.org/10.1371/journal.pone.0036337"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22563492"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22563492"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Irene Sambri, Filomena Massa, Francesca Gullo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impaired flickering of the permeability transition pore causes SPG7 spastic paraplegia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EBioMedicine (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ebiom.2020.103050"}], "href": "https://doi.org/10.1016/j.ebiom.2020.103050"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33045469"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33045469"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Carolina Montoro-Gámez, Hendrik Nolte, Thibaut Molinié, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SARM1 deletion delays cerebellar but not spinal cord degeneration in an enhanced mouse model of SPG7 deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awad136"}], "href": "https://doi.org/10.1093/brain/awad136"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37086482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37086482"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sabine Endele, Claudia Nelkenbrecher, Annegret Bördlein, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C4ORF48, a gene from the Wolf-Hirschhorn syndrome critical region, encodes a putative neuropeptide and is expressed during neocortex and cerebellar development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurogenetics (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10048-011-0275-8"}], "href": "https://doi.org/10.1007/s10048-011-0275-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21287218"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21287218"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Jiayi Yang, Hongjie Zhuang, Jinhua Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The secreted micropeptide C4orf48 enhances renal fibrosis via an RNA-binding mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI178392"}], "href": "https://doi.org/10.1172/JCI178392"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38625739"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38625739"}]}]}]}
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| NCBI Gene ID | 401115 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NICOL1 has 804 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for NICOL1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of NICOL1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of NICOL1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving NICOL1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by NICOL1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of NICOL1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of NICOL1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NICOL1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NICOL1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of NICOL1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of NICOL1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of NICOL1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of NICOL1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of NICOL1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |