NOTCH2NLB Gene

Name notch 2 N-terminal like B
Description Enables Notch binding activity. Involved in cerebral cortex development and positive regulation of Notch signaling pathway. Located in extracellular region. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nHuman-specific NOTCH2NL paralogs, including NOTCH2NLB, play a pivotal role in regulating Notch signaling during cortical development. Their expression in radial glial cells enhances Notch receptor activation through allele-dependent interactions, delaying the differentiation of neuronal progenitors. Moreover, perturbations in their dosage—through either ectopic expression or deletion—have been linked with neurodevelopmental disorders, as alterations in the 1q21.1 locus are associated with conditions ranging from macrocephaly and autism to microcephaly and schizophrenia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn studies of the developing human cortex, NOTCH2NLB and its paralogs have been shown to promote the clonal expansion and maintenance of cortical progenitors. Functionally, these genes act by activating the Notch pathway via inhibition of cis Delta/Notch interactions, ultimately leading to increased neuronal output and contributing to the evolutionary expansion and increased complexity of the human neocortex."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nInvestigations into archaic hominid genomes reveal that unique protein-coding variants and unusual genomic configurations of the NOTCH2NL gene family exist in Neanderthals and Denisovans. These findings, together with evidence of ongoing adaptive evolution in modern humans, suggest that fine-tuning of NOTCH2NLB dosage is critical for optimal cortical development and that evolutionary pressures have acted to balance its role in promoting brain expansion against the risk of neurodevelopmental disorders."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2018.03.051"}], "href": "https://doi.org/10.1016/j.cell.2018.03.051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29856954"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29856954"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ikuo K Suzuki, David Gacquer, Roxane Van Heurck, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2018.03.067"}], "href": "https://doi.org/10.1016/j.cell.2018.03.067"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29856955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29856955"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Gerrald A Lodewijk, Diana P Fernandes, Iraklis Vretzakis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Evol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/molbev/msaa104"}], "href": "https://doi.org/10.1093/molbev/msaa104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32330268"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32330268"}]}]}]}
NCBI Gene ID 100996763
API
Download Associations
Predicted Functions View NOTCH2NLB's ARCHS4 Predicted Functions.
Co-expressed Genes View NOTCH2NLB's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View NOTCH2NLB's ARCHS4 Predicted Functions.

Functional Associations

NOTCH2NLB has 1,777 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 20 datasets.

Click the + buttons to view associations for NOTCH2NLB from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of NOTCH2NLB gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of NOTCH2NLB gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of NOTCH2NLB gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing NOTCH2NLB protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with NOTCH2NLB protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with NOTCH2NLB gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving NOTCH2NLB gene from the curated GO Biological Process Annotations2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by NOTCH2NLB gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of NOTCH2NLB gene from the GTEx eQTL 2025 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of NOTCH2NLB gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of NOTCH2NLB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of NOTCH2NLB gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Reactome Pathways 2024 pathways involving NOTCH2NLB protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of NOTCH2NLB gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of NOTCH2NLB gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of NOTCH2NLB gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of NOTCH2NLB gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of NOTCH2NLB protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of NOTCH2NLB protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with NOTCH2NLB protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.