| Name | notch 2 N-terminal like C |
| Description | Enables Notch binding activity. Involved in cerebral cortex development and positive regulation of Notch signaling pathway. Located in extracellular region. Implicated in essential tremor 6; neuronal intranuclear inclusion disease; and oculopharyngodistal myopathy 3. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nHuman‐specific NOTCH2NLC is a member of the NOTCH2NL gene family that plays a central role in modulating Notch signaling—a pathway essential for the proliferation of radial glial cells and the precise timing of neuronal differentiation during cortical development. Functional studies have demonstrated that its dosage, modulated by allele‐specific differences and even structural variation, has likely contributed to the rapid expansion of the human neocortex, even though such dosage sensitivity may predispose the 1q21.1 locus to genomic instability."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to its evolutionarily beneficial role, abnormal expansion of a GGC repeat in the 5′ untranslated region of NOTCH2NLC has emerged as a pathogenic mechanism in a wide spectrum of adult-onset neuromuscular and neurodegenerative disorders. Expanded repeats in NOTCH2NLC have been robustly linked to neuronal intranuclear inclusion disease (NIID), with studies demonstrating that the resultant aberrant RNA transcripts and toxic polyglycine-containing proteins drive the formation of intranuclear inclusions. These inclusions are found not only in NIID patients—with presentations ranging from cognitive decline to movement abnormalities—but also in patients with essential tremor, oculopharyngodistal myopathy, peripheral neuropathies, and even in some cases of parkinsonism; yet, investigations in amyotrophic lateral sclerosis (ALS) and multiple system atrophy have largely reported negative findings."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond repeat length, additional layers of complexity such as epigenetic modifications—including CpG hypermethylation observed in some asymptomatic carriers—and potential interruptions within the repeat tract have been proposed as modifiers of disease penetrance and phenotype. Reviews and focused studies further suggest that the toxic gain-of-function mechanisms in NOTCH2NLC-associated disorders may underpin the multisystem involvement seen across conditions such as inherited peripheral neuropathy, cerebral small vessel disease, leukoencephalopathy, and parkinsonism, even as negative findings in ALS underscore the clinical heterogeneity. Together, these findings delineate a dual role for NOTCH2NLC: one as a key developmental regulator of brain expansion and another as a nidus for repeat expansion-driven neurodegeneration later in life."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "22"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ian T Fiddes, Gerrald A Lodewijk, Meghan Mooring, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2018.03.051"}], "href": "https://doi.org/10.1016/j.cell.2018.03.051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29856954"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29856954"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gerrald A Lodewijk, Diana P Fernandes, Iraklis Vretzakis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Evol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/molbev/msaa104"}], "href": "https://doi.org/10.1093/molbev/msaa104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32330268"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32330268"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yun Tian, Jun-Ling Wang, Wen Huang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41588-019-0459-y"}], "href": "https://doi.org/10.1038/s41588-019-0459-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31332381"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31332381"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Qi-Ying Sun, Qian Xu, Yun Tian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expansion of GGC repeat in the human-specific NOTCH2NLC gene is associated with essential tremor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awz372"}], "href": "https://doi.org/10.1093/brain/awz372"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31819945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31819945"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Pu Fang, Yanyan Yu, Sheng Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Repeat expansion scanning of the NOTCH2NLC gene in patients with multiple system atrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Clin Transl Neurol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/acn3.51021"}], "href": "https://doi.org/10.1002/acn3.51021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32250060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32250060"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Adeline S L Ng, Weng Khong Lim, Zheyu Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOTCH2NLC GGC Repeat Expansions Are Associated with Sporadic Essential Tremor: Variable Disease Expressivity on Long-Term Follow-up."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Neurol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ana.25803"}], "href": "https://doi.org/10.1002/ana.25803"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32495371"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32495371"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Zhiyong Chen, Zheyu Xu, Qianhui Cheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phenotypic bases of NOTCH2NLC GGC expansion positive neuronal intranuclear inclusion disease in a Southeast Asian cohort."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cge.13802"}], "href": "https://doi.org/10.1111/cge.13802"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32602554"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32602554"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Keqin Xu, Linlin Wan, Zhao Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "No genetic evidence for the involvement of GGC repeat expansions of the NOTCH2NLC gene in Chinese patients with multiple system atrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurobiol Aging (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neurobiolaging.2020.07.008"}], "href": "https://doi.org/10.1016/j.neurobiolaging.2020.07.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32768149"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32768149"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yanchun Yuan, Zhen Liu, Xuan Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of GGC repeat expansion in the "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "NOTCH2NLC"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " gene in amyotrophic lateral sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurology (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1212/WNL.0000000000010945"}], "href": "https://doi.org/10.1212/WNL.0000000000010945"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32989102"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32989102"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Masashi Ogasawara, Aritoshi Iida, Theerawat Kumutpongpanich, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CGG expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy with neurological manifestations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Neuropathol Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s40478-020-01084-4"}], "href": "https://doi.org/10.1186/s40478-020-01084-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33239111"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33239111"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Jiaxi Yu, Jianwen Deng, Xueyu Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awab077"}], "href": "https://doi.org/10.1093/brain/awab077"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33693509"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33693509"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Kang-Yang Jih, Ying-Tsen Chou, Pei-Chien Tsai, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Father-to-offspring transmission of extremely long NOTCH2NLC repeat expansions with contractions: genetic and epigenetic profiling with long-read sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-021-01192-5"}], "href": "https://doi.org/10.1186/s13148-021-01192-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34774111"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34774111"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Zhuoting Liu, Xia Guo, Haokun Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Muscle and skin fibroblast TDP-43 expression, dynamic mutation analysis of NOTCH2NLC and C9orf72 in patients with FOSMN."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10072-022-06339-7"}], "href": "https://doi.org/10.1007/s10072-022-06339-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35974122"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35974122"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Yi-Chu Liao, Cheng-Yu Wei, Fu-Pang Chang, et al. "}, {"type": "b", "children": [{"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "NOTCH2NLC"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " GGC Repeat Expansion in Patients With Vascular Leukoencephalopathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stroke (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/STROKEAHA.122.041848"}], "href": "https://doi.org/10.1161/STROKEAHA.122.041848"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36942588"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36942588"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Masahiro Ando, Yujiro Higuchi, Jun-Hui Yuan, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "GGC expansions in NOTCH2NLC contribute to Parkinson disease and dopaminergic neuron degeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/ene.16145"}], "href": "https://doi.org/10.1111/ene.16145"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37975799"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37975799"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Paola Ruffo, Francesca De Amicis, Vincenzo La Bella, et al. 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| NCBI Gene ID | 100996717 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NOTCH2NLC has 833 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for NOTCH2NLC from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of NOTCH2NLC gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing NOTCH2NLC protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with NOTCH2NLC protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores 2025 | diseases involving NOTCH2NLC gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with NOTCH2NLC gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving NOTCH2NLC gene from the curated GO Biological Process Annotations2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of NOTCH2NLC gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of NOTCH2NLC gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Reactome Pathways 2024 | pathways involving NOTCH2NLC protein from the Reactome Pathways 2024 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of NOTCH2NLC gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of NOTCH2NLC gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of NOTCH2NLC gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with NOTCH2NLC protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |