| Name | nuclear pore complex interacting protein family, member B13 |
| Description | Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have demonstrated that NPIPB13 functions as a critical negative regulator of receptor tyrosine kinase signaling, particularly influencing HER2 activity. Deregulated HER2 signaling is known to contribute to various pathophysiological conditions, and NPIPB13, acting in a capacity similar to that described for the PEST-type protein-tyrosine phosphatase BDP1, plays an essential role in modulating this pathway. By dephosphorylating HER2 and interfering with the recruitment and phosphorylation of downstream adaptor proteins, NPIPB13 ensures that cellular responses are finely tuned."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nFunctional studies have revealed that overexpression of NPIPB13 leads to a significant inhibition of ligand-induced activation of HER2, while a reduction in NPIPB13 levels results in increased phosphorylation of HER2. This effect is highly specific; whereas NPIPB13 markedly downregulates HER2 activity, the closely related EGFR is not similarly impacted, underscoring a substrate-specific regulatory mechanism. Furthermore, NPIPB13’s activity extends to the suppression of downstream signaling events, notably by diminishing the phosphorylation of the adaptor protein Gab1 and subsequent activation of the mitogen-activated protein kinase cascade."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nThe evidence supports a model in which NPIPB13 is coexpressed with HER2 in certain cancer cells, such as those found in breast cancer, suggesting a feedback regulatory role where NPIPB13 attenuates HER2-driven mitogenic signaling. This mechanism presents NPIPB13 as the first protein of its class implicated in directly modulating HER2 signal transduction, thus potentially offering a novel target for therapeutic intervention in diseases where HER2 signaling is aberrant."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Miriam Gensler, Marcus Buschbeck, Axel Ullrich "}, {"type": "b", "children": [{"type": "t", "text": "Negative regulation of HER2 signaling by the PEST-type protein-tyrosine phosphatase BDP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M309527200"}], "href": "https://doi.org/10.1074/jbc.M309527200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14660651"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14660651"}]}]}]}
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| NCBI Gene ID | 613037 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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NPIPB13 has 514 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for NPIPB13 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of NPIPB13 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with NPIPB13 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with NPIPB13 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with NPIPB13 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of NPIPB13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of NPIPB13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of NPIPB13 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of NPIPB13 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of NPIPB13 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of NPIPB13 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with NPIPB13 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |