NPSR1-AS1 Gene

Name NPSR1 antisense RNA 1
Description This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn hepatocellular carcinoma (HCC), the long noncoding RNA NPSR1‐AS1 acts as a hypoxia‐responsive regulator. Under low oxygen levels, HIF‑1α induces its expression, which in turn promotes HCC cell proliferation and glycolysis. Mechanistically, elevated NPSR1‐AS1 levels enhance the phosphorylation of ERK1/2 and increase pyruvate kinase M2 (PKM2) expression, thereby activating the MAPK/ERK pathway. Consequently, silencing NPSR1‐AS1 blunts hypoxia‐induced pathway activation and metabolic reprogramming, reducing tumor cell proliferation and glycolysis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "<br><br>\n\nIn thyroid cancer (TC), NPSR1‐AS1 is also highly expressed and contributes to tumor progression by modulating its neighboring gene, NPSR1. Functioning in concert with the RNA‐binding protein ELAVL1, NPSR1‐AS1 stabilizes NPSR1 mRNA, which in turn activates the MAPK pathway. This lncRNA–RBP–mRNA interaction supports enhanced proliferation, colony formation, and migration of TC cells, underscoring its role in the malignant phenotype"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "<br><br>\n\nTogether, these findings suggest that NPSR1‐AS1 operates as an oncogenic lncRNA across different tumor types by engaging key signaling cascades such as the MAPK/ERK pathway. In both HCC and TC, its regulation of cellular metabolism and proliferation underlines the potential of targeting the NPSR1‐AS1 axis as a novel therapeutic strategy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Haibin He, Tianxiang Chen, Huanye Mo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hypoxia-inducible long noncoding RNA NPSR1-AS1 promotes the proliferation and glycolysis of hepatocellular carcinoma cells by regulating the MAPK/ERK pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.09.076"}], "href": "https://doi.org/10.1016/j.bbrc.2020.09.076"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33008585"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33008585"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tiangen Ni, Dan Guo, Ling Tan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NPSR1-AS1 activates the MAPK pathway to facilitate thyroid cancer cell malignant behaviors via recruiting ELAVL1 to stabilize NPSR1 mRNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2021.1979773"}], "href": "https://doi.org/10.1080/15384101.2021.1979773"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35030041"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35030041"}]}]}]}
Synonyms AAA1
NCBI Gene ID 404744
API
Download Associations
Predicted Functions View NPSR1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View NPSR1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View NPSR1-AS1's ARCHS4 Predicted Functions.

Functional Associations

NPSR1-AS1 has 269 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for NPSR1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of NPSR1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of NPSR1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of NPSR1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of NPSR1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of NPSR1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of NPSR1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of NPSR1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of NPSR1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of NPSR1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with NPSR1-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with NPSR1-AS1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of NPSR1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of NPSR1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of NPSR1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.