OBI1-AS1 Gene

Name OBI1 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nOBI1‐AS1 is a long non‐coding RNA that emerges as a highly specific molecular marker for astrocytes. In glioma studies, its expression is significantly lower in glioblastoma (GBM) compared to low‐grade glioma samples, suggesting that its downregulation may be linked to the progression to a more malignant state. Detailed single nuclei RNA sequencing analysis demonstrated that OBI1‐AS1 distinguishes astrocytes with remarkable specificity (AUC = 0.99), outperforming established markers such as GFAP and S100B. Complementary bioinformatics and epigenomic investigations shed light on its potential functional roles in synaptic signal transduction and glutamatergic signaling pathways. Furthermore, analyses integrating Hi-C, methylation, and ChIP-Seq data indicate that the methylation state of a critical CTCF binding site is central to regulating OBI1‐AS1 expression by influencing local chromatin interactions. These insights collectively suggest that OBI1‐AS1 may serve not only as a precise astrocyte identifier in complex brain tissues but might also play a role in modulating the neural signaling processes that can be disrupted in glioma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ali Mamivand, Shiva Bayat, Abolfazl Maghrouni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Data mining of bulk and single-cell RNA sequencing introduces OBI1-AS1 as an astrocyte marker with possible role in glioma recurrence and progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-022-01260-4"}], "href": "https://doi.org/10.1186/s13148-022-01260-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35260196"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35260196"}]}]}]}
NCBI Gene ID 100874222
API
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Predicted Functions View OBI1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View OBI1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View OBI1-AS1's ARCHS4 Predicted Functions.

Functional Associations

OBI1-AS1 has 1 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for OBI1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
HuBMAP Azimuth Cell Type Annotations cell types associated with OBI1-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.