OR56B4 Gene

HGNC Family G protein-coupled receptors
Name olfactory receptor, family 56, subfamily B, member 4
Description Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLMCD1 (also known as dyxin) acts as a transcriptional regulator by engaging in protein–protein interactions with key transcription factors. For example, through its LIM and cysteine‐rich domains, LMCD1 interacts with the carboxy-terminal zinc finger of GATA6, thereby modulating GATA6’s ability to bind DNA and control tissue‐specific gene targets in the lung and heart. This interaction highlights its role as a cofactor that can repress transcriptional activation in certain cellular contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of the heart, LMCD1 is markedly upregulated in response to hypertrophic stimuli. Elevated LMCD1 expression promotes cardiomyocyte hypertrophy and activates the calcineurin signaling cascade, leading to increased expression of hypertrophic markers. Conversely, its knockdown blunts these responses, underscoring LMCD1’s causal role in pathological cardiac remodeling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough not directly analyzed for LMCD1 expression, proper regulation of cellular processes is essential for maintaining skeletal muscle mass and strength—factors crucial for overall health. The loss of muscle mass is associated with debilitating conditions such as cancer-cachexia and sarcopenia, providing an important context in which molecules like LMCD1 may play broader roles in cellular homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nLMCD1 also influences vascular remodeling. In vascular smooth muscle cells, thrombin stimulation leads to an increase in LMCD1 expression, which in turn modulates cell proliferation and migration. Interestingly, its regulatory role appears species-specific: in human smooth muscle cells, LMCD1 acts as an activator of transcription factors such as E2F1 and NFATc1, while in mouse cells it functions as a repressor—a difference partly determined by post-translational modifications such as myristoylation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the testis, LMCD1 is exclusively expressed in the nuclei of Sertoli cells where it plays a pivotal role in maintaining testicular function. By facilitating the dephosphorylation and nuclear translocation of NFAT1, LMCD1 enhances the transcription of genes essential for phagocytosis of apoptotic germ cells. This process is vital for lipid homeostasis and preventing premature cellular senescence, ultimately contributing to optimal male fertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, LMCD1 is implicated in renal pathology. In models of chronic kidney disease, its expression is elevated in the injured kidney, where LMCD1 promotes tubulointerstitial fibrosis by upregulating profibrotic factors (such as TGF‐β1, fibronectin, and collagens) and activating ERK signaling pathways. Additionally, LMCD1 contributes to renal inflammation by enhancing nuclear translocation of NFAT1 and subsequent NLRP3 inflammasome activation. Silencing LMCD1 in these settings ameliorates both fibrosis and inflammation, positioning it as a promising therapeutic target for renal injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Nibedita Rath, Zhishan Wang, Min Min Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LMCD1/Dyxin is a novel transcriptional cofactor that restricts GATA6 function by inhibiting DNA binding."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.20.8864-8873.2005"}], "href": "https://doi.org/10.1128/MCB.25.20.8864-8873.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16199866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16199866"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Derk Frank, Robert Frauen, Christiane Hanselmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lmcd1/Dyxin, a novel Z-disc associated LIM protein, mediates cardiac hypertrophy in vitro and in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Cell Cardiol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yjmcc.2010.06.009"}], "href": "https://doi.org/10.1016/j.yjmcc.2010.06.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20600098"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20600098"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Duarte M S Ferreira, Arthur J Cheng, Leandro Z Agudelo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIM and cysteine-rich domains 1 (LMCD1) regulates skeletal muscle hypertrophy, calcium handling, and force."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Skelet Muscle (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13395-019-0214-1"}], "href": "https://doi.org/10.1186/s13395-019-0214-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31666122"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31666122"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Suresh Govatati, Prahalathan Pichavaram, Jagadeesh Janjanam, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Myristoylation of LMCD1 Leads to Its Species-Specific Derepression of E2F1 and NFATc1 in the Modulation of CDC6 and IL-33 Expression During Development of Vascular Lesions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.120.314147"}], "href": "https://doi.org/10.1161/ATVBAHA.120.314147"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32160773"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32160773"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiaohang Jin, Sheng Zhang, Tianbing Ding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Testicular Lmcd1 regulates phagocytosis by Sertoli cells through modulation of NFAT1/Txlna signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging Cell (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/acel.13217"}], "href": "https://doi.org/10.1111/acel.13217"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32840323"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32840323"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Rui Yu, Mi Tian, Ping He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Suppression of LMCD1 ameliorates renal fibrosis by blocking the activation of ERK pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Cell Res (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbamcr.2021.119200"}], "href": "https://doi.org/10.1016/j.bbamcr.2021.119200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34968577"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34968577"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yu Bai, Mi Tian, Ping He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LMCD1 is involved in tubulointerstitial inflammation in the early phase of renal fibrosis by promoting NFATc1-mediated NLRP3 activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Immunopharmacol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.intimp.2023.110362"}], "href": "https://doi.org/10.1016/j.intimp.2023.110362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37311356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37311356"}]}]}]}
Synonyms OR11-67
Proteins O56B4_HUMAN
NCBI Gene ID 196335
API
Download Associations
Predicted Functions View OR56B4's ARCHS4 Predicted Functions.
Co-expressed Genes View OR56B4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View OR56B4's ARCHS4 Predicted Functions.

Functional Associations

OR56B4 has 1,314 functional associations with biological entities spanning 7 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 48 datasets.

Click the + buttons to view associations for OR56B4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of OR56B4 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of OR56B4 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of OR56B4 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
BioGPS Mouse Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of OR56B4 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of OR56B4 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of OR56B4 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of OR56B4 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of OR56B4 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of OR56B4 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing OR56B4 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with OR56B4 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by OR56B4 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with OR56B4 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at OR56B4 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of OR56B4 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of OR56B4 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing OR56B4 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of OR56B4 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of OR56B4 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of OR56B4 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GO Biological Process Annotations 2015 biological processes involving OR56B4 gene from the curated GO Biological Process Annotations 2015 dataset.
GO Cellular Component Annotations 2015 cellular components containing OR56B4 protein from the curated GO Cellular Component Annotations 2015 dataset.
GO Molecular Function Annotations 2015 molecular functions performed by OR56B4 gene from the curated GO Molecular Function Annotations 2015 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by OR56B4 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by OR56B4 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of OR56B4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of OR56B4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of OR56B4 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with OR56B4 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles cell lines with high or low expression of OR56B4 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of OR56B4 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for OR56B4 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of OR56B4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of OR56B4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of OR56B4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
KEGG Pathways 2026 pathways involving OR56B4 protein from the KEGG Pathways 2026 dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of OR56B4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain OR56B4 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of OR56B4 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Reactome Pathways 2014 pathways involving OR56B4 protein from the Reactome Pathways dataset.
Reactome Pathways 2024 pathways involving OR56B4 protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of OR56B4 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of OR56B4 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of OR56B4 gene from the RummaGEO Gene Perturbation Signatures dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of OR56B4 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of OR56B4 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of OR56B4 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with OR56B4 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.