PAUPAR Gene

HGNC Family Non-coding RNAs
Name PAX6 upstream antisense RNA
Description This gene is thought to produce a functional long non-coding RNA. Knockdown of this transcript results in genome-wide changes in gene expression, particularly of cell cyle genes, indicating a role in regulating differentiation. This transcript may bind to the promoter region of target genes and may also interact with the transcription factor Pax6 (paired box 6). [provided by RefSeq, Feb 2015]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nlncRNA PAUPAR has emerged as an important tumor‐suppressive regulator in cancer. In uveal melanoma, PAUPAR is expressed at low levels, and its ectopic re‐expression silences HES1 by inhibiting histone H3K4 methylation, a process that markedly reduces tumor metastasis. Similarly, in colorectal cancer, diminished PAUPAR correlates with enhanced proliferation, migration, and invasion, while its overexpression suppresses malignant features by modulating the miR‑17‑5p/ZNF750 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of neural development, PAUPAR plays a critical role in cortical differentiation. Located adjacent to the PAX6 gene, PAUPAR interacts directly with PAX6 to secure appropriate binding to regulatory regions of numerous neural genes. This interaction facilitates the recruitment of the histone methyltransferase NSD1, driving H3K36 methylation and thereby orchestrating the epigenetic programs essential for proper cortical lineage specification."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these studies reveal that PAUPAR exerts multifaceted regulatory functions through epigenetic modulation. Whether by restraining oncogenic processes in uveal melanoma and colorectal cancer or by guiding neural gene expression during cortical differentiation, PAUPAR represents an intrinsic regulatory node with significant potential as a therapeutic target in both oncology and neurodevelopment."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xia Ding, Xi Wang, Ming Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAUPAR lncRNA suppresses tumourigenesis by H3K4 demethylation in uveal melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1873-3468.12220"}], "href": "https://doi.org/10.1002/1873-3468.12220"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27214741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27214741"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ruhui Wen, Chao Chen, Xiaohua Zhong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAX6 upstream antisense RNA (PAUPAR) inhibits colorectal cancer progression through modulation of the microRNA (miR)-17-5p / zinc finger protein 750 (ZNF750) axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1940071"}], "href": "https://doi.org/10.1080/21655979.2021.1940071"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34288812"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34288812"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yanxin Xu, Jiajie Xi, Guiying Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAUPAR and PAX6 sequentially regulate human embryonic stem cell cortical differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkab030"}], "href": "https://doi.org/10.1093/nar/gkab030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33544864"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33544864"}]}]}]}
NCBI Gene ID 103157000
API
Download Associations
Predicted Functions View PAUPAR's ARCHS4 Predicted Functions.
Co-expressed Genes View PAUPAR's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PAUPAR's ARCHS4 Predicted Functions.

Functional Associations

PAUPAR has 3 functional associations with biological entities spanning 1 categories (disease, phenotype or trait) extracted from 1 datasets.

Click the + buttons to view associations for PAUPAR from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by PAUPAR gene knockout from the IMPC Knockout Mouse Phenotypes dataset.