PAXX Gene

Name PAXX non-homologous end joining factor
Description The protein encoded by this gene plays a role in the nonhomologous end joining (NHEJ) pathway of DNA double-strand break repair. The encoded protein may function to stabilize the Ku70/Ku80 heterodimer to facilitate the assembly and maintain the stability of the NHEJ complex. [provided by RefSeq, Jul 2016]
Summary
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Loss‐of‐function studies using RNA interference and CRISPR-Cas9 have demonstrated that PAXX is required for efficient DSB repair and cell survival following exposure to DSB-inducing agents."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBiochemical and structural analyses have revealed that PAXX contains a conserved C-terminal Ku-binding motif that facilitates its incorporation into larger repair complexes. By forming stable assemblies with Ku—including simultaneous binding with XLF—and bridging partner interactions, PAXX enhances Ku-dependent DNA ligation and supports the recruitment of downstream repair factors. In addition, PAXX has been shown to interact with DNA polymerases such as polymerase λ and polymerase β, thereby stimulating polymerase activity during end processing and gap filling in NHEJ as well as contributing to base excision repair pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGenetic analyses underscore the accessory yet critical function of PAXX in DSB repair. Although cells deficient for PAXX sometimes exhibit only modest repair defects—likely owing to functional redundancy with factors such as XLF—combined loss of PAXX with other NHEJ components (for instance, XLF or DNA-PKcs) leads to synthetic lethality in animal models, highlighting overlapping roles in stabilizing DNA repair complexes. Moreover, recent studies indicate that while loss of core factors like XRCC4 prominently impairs repair, PAXX’s contribution becomes increasingly essential under conditions that challenge the repair machinery, with potential implications in contexts such as radioresistance and chemotherapeutic response."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Takashi Ochi, Andrew N Blackford, Julia Coates, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA repair. PAXX, a paralog of XRCC4 and XLF, interacts with Ku to promote DNA double-strand break repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1261971"}], "href": "https://doi.org/10.1126/science.1261971"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25574025"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25574025"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mengtan Xing, Mingrui Yang, Wei Huo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interactome analysis identifies a new paralogue of XRCC4 in non-homologous end joining DNA repair pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms7233"}], "href": "https://doi.org/10.1038/ncomms7233"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25670504"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25670504"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ben Yang, Xueqi Fu, Jilong Hao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAXX Participates in Base Excision Repair via Interacting with Pol β and Contributes to TMZ Resistance in Glioma Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Neurosci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12031-018-1157-4"}], "href": "https://doi.org/10.1007/s12031-018-1157-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30238427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30238427"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Andrew Craxton, Deeksha Munnur, Rebekah Jukes-Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAXX and its paralogs synergistically direct DNA polymerase λ activity in DNA repair."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-018-06127-y"}], "href": "https://doi.org/10.1038/s41467-018-06127-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30250067"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30250067"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Murielle Seif-El-Dahan, Antonia Kefala-Stavridi, Philippe Frit, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAXX binding to the NHEJ machinery explains functional redundancy with XLF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.adg2834"}], "href": "https://doi.org/10.1126/sciadv.adg2834"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37256950"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37256950"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Satish K Tadi, Carine Tellier-Lebègue, Clément Nemoz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PAXX Is an Accessory c-NHEJ Factor that Associates with Ku70 and Has Overlapping Functions with XLF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.09.026"}], "href": "https://doi.org/10.1016/j.celrep.2016.09.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27705800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27705800"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sergio Castañeda-Zegarra, Mengtan Xing, Raquel Gago-Fuentes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Synthetic lethality between DNA repair factors Xlf and Paxx is rescued by inactivation of Trp53."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2018.12.002"}], "href": "https://doi.org/10.1016/j.dnarep.2018.12.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30579708"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30579708"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Brian Ruis, Amy Molan, Taylor Takasugi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Absence of XRCC4 and its paralogs in human cells reveal differences in outcomes for DNA repair and V(D)J recombination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2019.102738"}], "href": "https://doi.org/10.1016/j.dnarep.2019.102738"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31731258"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31731258"}]}]}]}
NCBI Gene ID 286257
API
Download Associations
Predicted Functions View PAXX's ARCHS4 Predicted Functions.
Co-expressed Genes View PAXX's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PAXX's ARCHS4 Predicted Functions.

Functional Associations

PAXX has 1,214 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 31 datasets.

Click the + buttons to view associations for PAXX from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Proteomics Cell lines associated with PAXX protein from the CCLE Cell Line Proteomics dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of PAXX gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing PAXX protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PAXX protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of PAXX protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by PAXX gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PAXX gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with PAXX gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
GlyGen Glycosylated Proteins ligands (chemical) binding PAXX protein from the GlyGen Glycosylated Proteins dataset.
GO Biological Process Annotations 2023 biological processes involving PAXX gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving PAXX gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing PAXX protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing PAXX protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by PAXX gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by PAXX gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of PAXX gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of PAXX gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of PAXX gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by PAXX gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by PAXX gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of PAXX gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2023 pathways involving PAXX protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving PAXX protein from the Wikipathways PFOCR 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAXX gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAXX gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PAXX gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PAXX gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PAXX gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PAXX protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PAXX protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PAXX protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.