| Name | photoreceptor cilium actin regulator |
| Description | The protein encoded by this gene is highly expressed in photoreceptors and may associate with the primary cilium of the outer segment. The encoded protein appears to undergo post-translational lipid modification. Nonsense and missense variants of this gene appear to cause a recessive form of retinitis pigmentosa. [provided by RefSeq, Jun 2010] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPCARE (previously designated C2ORF71) is a retina‐specific gene that plays a critical role in photoreceptor cell integrity and visual function. Multiple studies have demonstrated that PCARE is predominantly expressed in the retina, with localization to the primary cilium or connecting cilium of photoreceptor cells. Disruptive mutations—including truncating and missense variants—have been identified in patients with autosomal‐recessive retinitis pigmentosa, a disorder characterized by night blindness, constricted visual fields, and markedly diminished electroretinographic responses. Functional models, including early‐expression studies in the developing mouse eye and zebrafish knockdown experiments, confirm that PCARE is essential for the normal development and maintenance of photoreceptors."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n\nIn the broader context of inherited retinal degenerations, PCARE’s involvement is set against a complex backdrop of genetic heterogeneity that also encompasses syndromic forms such as Usher syndrome. Investigations integrating genome‐wide mapping and phenotypic characterization reinforce its role as a key factor in retinal dystrophy, while reviews of retinitis pigmentosa emphasize the interplay of multiple genetic loci that modulate photoreceptor viability and disease expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n\nEmerging studies have begun to explore potential extra‐retinal associations and the wider regulatory milieu in which PCARE operates. For example, researchers have evaluated genetic variants at the C2orf71 locus for possible links with colorectal cancer susceptibility, hinting at pleiotropic effects that may extend beyond visual physiology. Moreover, investigations into the translational control of retinal proteins and studies of related regulatory networks in other cellular systems—such as those governing dendritic cell apoptosis and m6A‐mediated mRNA translation—offer valuable context to the complex cellular pathways that underpin retinal health."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rob W J Collin, Christine Safieh, Karin W Littink, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutations in C2ORF71 cause autosomal-recessive retinitis pigmentosa."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2010.03.016"}], "href": "https://doi.org/10.1016/j.ajhg.2010.03.016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20398884"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20398884"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Darryl Y Nishimura, Lisa M Baye, Rahat Perveen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Discovery and functional analysis of a retinitis pigmentosa gene, C2ORF71."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2010.03.005"}], "href": "https://doi.org/10.1016/j.ajhg.2010.03.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20398886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20398886"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Panagiotis I Sergouniotis, Zheng Li, Donna S Mackay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A survey of DNA variation of C2ORF71 in probands with progressive autosomal recessive retinal degeneration and controls."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.10-6043"}], "href": "https://doi.org/10.1167/iovs.10-6043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20811058"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20811058"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Isabelle Audo, Marie-Elise Lancelot, Saddek Mohand-Saïd, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel C2orf71 mutations account for ∼1% of cases in a large French arRP cohort."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mutat (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/humu.21460"}], "href": "https://doi.org/10.1002/humu.21460"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21412943"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21412943"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Christina Gerth-Kahlert, Amit Tiwari, James V M Hanson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C2orf71 Mutations as a Frequent Cause of Autosomal-Recessive Retinitis Pigmentosa: Clinical Analysis and Presentation of 8 Novel Mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Invest Ophthalmol Vis Sci (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1167/iovs.17-21597"}], "href": "https://doi.org/10.1167/iovs.17-21597"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28763557"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28763557"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Samer Khateb, Lina Zelinger, Liliana Mizrahi-Meissonnier, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A homozygous nonsense CEP250 mutation combined with a heterozygous nonsense C2orf71 mutation is associated with atypical Usher syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Med Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/jmedgenet-2014-102287"}], "href": "https://doi.org/10.1136/jmedgenet-2014-102287"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24780881"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24780881"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yangfan P Liu, Daniëlle G M Bosch, Anna M Siemiatkowska, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Putative digenic inheritance of heterozygous RP1L1 and C2orf71 null mutations in syndromic retinal dystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ophthalmic Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3109/13816810.2016.1151898"}], "href": "https://doi.org/10.3109/13816810.2016.1151898"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27029556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27029556"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Markus Zwick, Thomas Ulas, Yi-Li Cho, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " Dendritic Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2019.00222"}], "href": "https://doi.org/10.3389/fimmu.2019.00222"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30809231"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30809231"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Shaofeng Jiang, Ying He, Rongrong Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of chromosome 2 open reading frame 71 in colorectal cancer susceptibility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Clin Oncol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10147-022-02270-1"}], "href": "https://doi.org/10.1007/s10147-022-02270-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36396885"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36396885"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yeming Yang, Xiaoyan Jiang, Junyao Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The m[6]A reader YTHDC2 maintains visual function and retinal photoreceptor survival through modulating translation of PPEF2 and PDE6B."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Genet Genomics (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jgg.2023.12.007"}], "href": "https://doi.org/10.1016/j.jgg.2023.12.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38157933"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38157933"}]}]}]}
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| NCBI Gene ID | 388939 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PCARE has 550 functional associations with biological entities spanning 6 categories (disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 18 datasets.
Click the + buttons to view associations for PCARE from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PCARE gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with PCARE gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing PCARE protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with PCARE protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores 2025 | diseases involving PCARE gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with PCARE gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving PCARE gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing PCARE protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of PCARE gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of PCARE gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with PCARE gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of PCARE gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of PCARE gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of PCARE gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of PCARE gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PCARE protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with PCARE protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving PCARE protein from the WikiPathways Pathways 2024 dataset. | |