| HGNC Family | Non-coding RNAs |
| Name | prostate cancer associated transcript 1 (non-protein coding) |
| Description | This gene produces a long non-coding RNA that promotes cell proliferation and is upregulated in prostate, colorectal, and other cancers. This RNA negatively regulates the BRCA2 tumor suppressor protein and positively regulates Myc oncoprotein. It contains binding sites for microRNAs, and may act as a sponge for microRNAs that regulate cell growth pathways. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have revealed that the long non‐coding RNA PCAT1 is highly dysregulated in a spectrum of human cancers. Initially identified in prostate cancer, PCAT1 functions as a prostate‐specific regulator of cell proliferation and a transcriptional repressor through association with epigenetic complexes (e.g., PRC2) while also impairing DNA repair via repression of BRCA2. Its ability to stabilize oncogenic factors such as c‐Myc further promotes cell growth and survival. In addition, aberrantly high PCAT1 expression correlates with aggressive tumor phenotypes and poor prognosis in colorectal and esophageal cancers, and elevated levels have even been detected in the serum of multiple myeloma patients."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistically, PCAT1 mediates its oncogenic effects through diverse pathways. It acts as a competing endogenous RNA (ceRNA) by “sponging” tumor‐suppressive microRNAs—including miR‑145‑5p, miR‑326, miR‑215, and miR‑128—to de‐repress targets such as FSCN1, WNT1, c‐Myc, and ZEB1. PCAT1 also modulates key signaling pathways; for instance, in PTEN‐deficient settings it disrupts regulatory complexes (involving PHLPP and FKBP51) to activate AKT and NF‑κB, while its interaction with EZH2 facilitates epigenetic silencing of tumor suppressors like PTEN. Furthermore, its enrichment in exosomes supports a role in intercellular communication that enhances invasiveness and chemoresistance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nClinically, high PCAT1 expression has been associated with enhanced metastatic potential, increased invasion, and resistance to chemotherapeutic agents such as cisplatin. Its involvement in driving tumor cell cycle progression and inhibiting apoptosis has been documented in a range of cancers including colorectal, gastric, bladder, head and neck, and lung malignancies. Moreover, genetic variants (SNPs) within PCAT1 have been linked to heightened cancer susceptibility, and elevated tissue or plasma levels support its promise as a non‐invasive biomarker for diagnosis, prognosis, and therapeutic stratification."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "21", "end_ref": "30"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther exploration has expanded the oncogenic landscape of PCAT1 to additional malignancies such as glioma, endometrial, diffuse large B‑cell lymphoma, ovarian, and laryngeal cancers. In these contexts, PCAT1 contributes to radiation resistance and tumor progression via modulation of pathways including NF‑κB, MAP kinase cascades, and the regulation of efflux transporters like ABCB1. Notably, beyond its role in cancer, PCAT1 influences non‐malignant processes—for example, by modulating osteogenic differentiation through Toll‑like receptor signaling and affecting hair follicle regeneration—underscoring its broader biological significance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "31", "end_ref": "42"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, PCAT1 emerges as a multifaceted regulator of tumor biology. By orchestrating key oncogenic processes—including cell proliferation, invasion, resistance to apoptosis, and chemoresistance—through intricate mechanisms such as microRNA sponging, epigenetic modulation, and signal transduction regulation, PCAT1 not only underpins tumor aggressiveness but also holds substantial promise as a diagnostic and prognostic biomarker as well as a therapeutic target. Targeting the PCAT1‐mediated networks may therefore open promising avenues to overcome drug resistance and improve outcomes across various cancer types."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "43", "end_ref": "49"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "John R Prensner, Matthew K Iyer, O Alejandro Balbin, et al. 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| Synonyms | PCAT-1 |
| NCBI Gene ID | 100750225 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PCAT1 has 472 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for PCAT1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCAT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCAT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PCAT1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PCAT1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of PCAT1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with PCAT1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of PCAT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PCAT1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with PCAT1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with PCAT1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of PCAT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of PCAT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PCAT1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |