PCGEM1 Gene

HGNC Family Non-coding RNAs
Name PCGEM1, prostate-specific transcript (non-protein coding)
Description This gene produces a long non-coding RNA that is overexpressed in prostate cancer and may act a marker for tumor progression. This RNA may act a negative regulator of apoptosis, and may promote activity of androgen receptor and Myc. [provided by RefSeq, Dec 2017]
Summary
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These findings underscore its role as a critical oncogenic driver in prostate cancer."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its impact on AR signaling, PCGEM1 has been implicated in reprogramming tumor cell metabolism and modulating alternative pre‐mRNA splicing. By directly binding to factors such as c-Myc and splicing regulators, this lncRNA promotes glucose uptake, facilitates aerobic glycolysis, and influences the emergence of AR splice variants—all of which provide growth advantages to cancer cells. These layered functions illustrate the multifaceted role of PCGEM1 in sustaining oncogenic programs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its well‐documented functions in prostate cancer, aberrant expression of PCGEM1 is observed in a broad array of malignancies including ovarian, non‐small cell lung, endometrial, renal, colorectal, gastric, cervical, glioma, oral squamous cell carcinoma, and osteosarcoma. In these contexts, PCGEM1 commonly acts as a competing endogenous RNA, “sponging” various microRNAs (for example, miR-129-5p, miR-642a-5p) to indirectly regulate oncogenic targets such as STAT3, FGF2, CDT1, SOX4, and others. Such interactions support its roles in enhancing cell proliferation, migration, invasion, and resistance to apoptosis across different tumor types."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn non-malignant conditions such as osteoarthritis, PCGEM1 is similarly overexpressed and functions to promote synoviocyte proliferation while suppressing apoptosis. Acting as a molecular sponge for miRNAs like miR-770, it modulates autophagy and cell survival mechanisms, suggesting that its dysregulation may also contribute to disease progression outside the classical cancer setting."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional layers of regulation involve transcriptional control and potential genetic predisposition. Evidence indicates that transcription factors such as MEF2 and architectural proteins like CTCF can modulate PCGEM1 expression, while genetic variations within the PCGEM1 locus may influence prostate cancer susceptibility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, PCGEM1 interfaces with multiple signaling pathways—ranging from STAT3 and TGFβ/Smad to NF-κB and β-catenin—as well as interacting with diverse miRNA-target axes (including miR-129-5p and miR-642a-5p pathways). Such wide-ranging interactions consolidate its role as a central regulator of cell cycle progression, apoptosis, chemoresistance, and metastasis, making PCGEM1 a promising target for therapeutic intervention across several disease models."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "22"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Liuqing Yang, Chunru Lin, Chunyu Jin, et al. 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Synonyms NCRNA00071, LINC00071, PCAT9
NCBI Gene ID 64002
API
Download Associations
Predicted Functions View PCGEM1's ARCHS4 Predicted Functions.
Co-expressed Genes View PCGEM1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PCGEM1's ARCHS4 Predicted Functions.

Functional Associations

PCGEM1 has 613 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 24 datasets.

Click the + buttons to view associations for PCGEM1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PCGEM1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of PCGEM1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PCGEM1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of PCGEM1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PCGEM1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PCGEM1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of PCGEM1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of PCGEM1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD High Level Gene-Disease Associations diseases associated with PCGEM1 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with PCGEM1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of PCGEM1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PCGEM1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PCGEM1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of PCGEM1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of PCGEM1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PCGEM1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with PCGEM1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with PCGEM1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with PCGEM1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of PCGEM1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PCGEM1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PCGEM1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at PCGEM1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of PCGEM1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.