PITRM1-AS1 Gene

Name PITRM1 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts directly mention or investigate PITRM1‑AS1, the collective work detailed in these studies focuses on transcriptional regulation mediated by early growth response (Egr) proteins and their modulators—especially the NAB (NGFI-A‑binding) proteins—in a variety of biological processes. For example, studies have demonstrated that NAB1 and NAB2 are essential transcriptional cofactors that interact with Egr2 to promote Schwann cell differentiation and proper peripheral nerve myelination, with disruption of this regulatory complex leading to severe hypomyelination."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther reports have extended the role of the Egr/NAB network to immune cell regulation, showing that the balance between Egr family members and NAB2 expression is critical for modulating T cell activation versus inhibition. In these studies, alterations in the levels or function of these transcription factors and their cofactors influenced cytokine production and T cell responsiveness, thereby impacting immune homeostasis and autoimmunity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditionally, other investigations have revealed that NAB2 plays a pivotal role in controlling fibrotic responses. In the context of TGF‑β signaling and collagen synthesis, NAB2 was shown to negatively regulate Egr‑1–dependent transcription, thereby modulating fibroblast differentiation and extracellular matrix deposition. A feedback mechanism involving NAB2 was also described in FGF23-mediated responses, further emphasizing the importance of the Egr/NAB axis in maintaining cellular equilibrium."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies included in this collection extend our understanding of NAB protein function to broader aspects of neural development, chromatin remodeling and even thymocyte homeostasis. For instance, research on NAV2—a related gene implicated in neuronal migration and cerebellar development—along with detailed analyses of NAB2 nuclear localization and its influence on the transcription of key neuronal markers, highlights the extensive regulatory networks in which these cofactors participate."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the function of PITRM1‑AS1 remains unaddressed in these abstracts, the data collectively underscore the critical importance of Egr transcription factors and their coregulators (i.e. NAB1 and NAB2) in orchestrating cellular differentiation, immune responses, fibrotic processes, and neural development. Whether PITRM1‑AS1 might intersect with or modulate any part of the Egr/NAB network is not established by the current literature and represents an open question for future research.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Nam Le, Rakesh Nagarajan, James Y T Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nab proteins are essential for peripheral nervous system myelination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Neurosci (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nn1490"}], "href": "https://doi.org/10.1038/nn1490"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16136673"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16136673"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rajini Srinivasan, Gennifer M Mager, Rebecca M Ward, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NAB2 represses transcription by interacting with the CHD4 subunit of the nucleosome remodeling and deacetylase (NuRD) complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M600775200"}], "href": "https://doi.org/10.1074/jbc.M600775200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16574654"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16574654"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Sam Collins, Michael A Lutz, Paul E Zarek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Opposing regulation of T cell function by Egr-1/NAB2 and Egr-2/Egr-3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Immunol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/eji.200737157"}], "href": "https://doi.org/10.1002/eji.200737157"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18203138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18203138"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Samuel Collins, Lawrence A Wolfraim, Charles G Drake, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cutting Edge: TCR-induced NAB2 enhances T cell function by coactivating IL-2 transcription."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.177.12.8301"}], "href": "https://doi.org/10.4049/jimmunol.177.12.8301"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17142725"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17142725"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Swati Bhattacharyya, Jun Wei, Denisa S Melichian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcriptional cofactor nab2 is induced by tgf-Beta and suppresses fibroblast activation: physiological roles and impaired expression in scleroderma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0007620"}], "href": "https://doi.org/10.1371/journal.pone.0007620"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19888474"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19888474"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Toru Fukuda, Kazuhiro Kanomata, Junya Nojima, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FGF23 induces expression of two isoforms of NAB2, which are corepressors of Egr-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2006.12.011"}], "href": "https://doi.org/10.1016/j.bbrc.2006.12.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17174939"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17174939"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Andrea Accogli, Shenzhao Lu, Ilaria Musante, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Neuron Navigator 2 Impairs Brain and Cerebellar Development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cerebellum (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12311-022-01379-3"}], "href": "https://doi.org/10.1007/s12311-022-01379-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35218524"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35218524"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Samira Chandwani, Serene Keilani, Maitane Ortiz-Virumbrales, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Induction of DARPP-32 by brain-derived neurotrophic factor in striatal neurons in vitro is modified by histone deacetylase inhibitors and Nab2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0076842"}], "href": "https://doi.org/10.1371/journal.pone.0076842"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24204683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24204683"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jacquelyn LaVallee, Terrain Grant, Stephanie D'Angelo-Early, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Refining the nuclear localization signal within the Egr transcriptional coregulator NAB2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1873-3468.13288"}], "href": "https://doi.org/10.1002/1873-3468.13288"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30411343"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30411343"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "K Taraszka Hastings, Diana Elizalde, Leela Muppana, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nab2 maintains thymus cellularity with aging and stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2017.02.019"}], "href": "https://doi.org/10.1016/j.molimm.2017.02.019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28282643"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28282643"}]}]}]}
NCBI Gene ID 100507034
API
Download Associations
Predicted Functions View PITRM1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View PITRM1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PITRM1-AS1's ARCHS4 Predicted Functions.

Functional Associations

PITRM1-AS1 has 813 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for PITRM1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of PITRM1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PITRM1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PITRM1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PITRM1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PITRM1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PITRM1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PITRM1-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PITRM1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of PITRM1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PITRM1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of PITRM1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.