| Name | PMF1-BGLAP readthrough |
| Description | This locus represents naturally occurring read-through transcription between the neighboring PMF1 (polyamine-modulated factor 1) and BGLAP (bone gamma-carboxyglutamate Gla protein) genes on chromosome 1. Alternative splicing results in multiple transcript variants encoding isoforms that share sequence identity with the upstream gene product, but they contain distinct C-termini due to frameshifts versus the downstream gene coding sequence. [provided by RefSeq, Dec 2010] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPMF1‐BGLAP appears to serve as an integrative regulator of protein S‐palmitoylation, a reversible lipid modification mediated by zinc finger DHHC‐domain acyltransferases. Multiple studies have shown that enzymes such as HIP14 and HIP14L promote the palmitoylation of key neuronal substrates—including huntingtin and SNAP25—ensuring proper synaptic function and Mg²⁺ transport. These processes are essential for maintaining neuronal homeostasis, and defects in PAT activity have been linked to neurodegenerative phenotypes reminiscent of Huntington’s disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its neurological roles, the PMF1‐BGLAP network is implicated in skeletal development and skin homeostasis. Loss‐of‐function mutations in PAT genes such as Zdhhc13 have been associated with delayed ossification, reduced bone mineral density, and decreased osteocalcin expression due to impaired palmitoylation (for example, of MT1‐MMP). Moreover, disrupted PAT activity has been linked to aberrant BMP signaling during early embryogenesis and contributes to skin abnormalities—including hypotrichosis, epidermal hyperplasia, and enhanced carcinogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "8"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, PMF1‐BGLAP–linked regulatory pathways extend to the control of mitochondrial dynamics, anxiety‐related behaviors, and the integrity of skin barrier functions. Deficiencies in ZDHHC13 affect the palmitoylation of proteins such as Drp1—thereby disrupting mitochondrial fission–fusion balance and culminating in altered neurotransmission and motor coordination—while also predisposing the skin to barrier defects and heightened inflammatory responses upon microbial challenge. These diverse roles highlight the significance of proper palmitoylation in maintaining physiological homeostasis across multiple tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Angela Goytain, Rochelle M Hines, Gary A Quamme "}, {"type": "b", "children": [{"type": "t", "text": "Huntingtin-interacting proteins, HIP14 and HIP14L, mediate dual functions, palmitoyl acyltransferase and Mg2+ transport."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M801469200"}], "href": "https://doi.org/10.1074/jbc.M801469200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18794299"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18794299"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Amir N Saleem, Yen-Hui Chen, Hwa Jin Baek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mice with alopecia, osteoporosis, and systemic amyloidosis due to mutation in Zdhhc13, a gene coding for palmitoyl acyltransferase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1000985"}], "href": "https://doi.org/10.1371/journal.pgen.1000985"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20548961"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20548961"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Liza M Sutton, Shaun S Sanders, Stefanie L Butland, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hip14l-deficient mice develop neuropathological and behavioural features of Huntington disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/dds441"}], "href": "https://doi.org/10.1093/hmg/dds441"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23077216"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23077216"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "I-Wen Song, Wei-Ru Li, Li-Ying Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Palmitoyl acyltransferase, Zdhhc13, facilitates bone mass acquisition by regulating postnatal epiphyseal development and endochondral ossification: a mouse model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0092194"}], "href": "https://doi.org/10.1371/journal.pone.0092194"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24637783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24637783"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xueran Chen, Wei Shi, Fen Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zinc finger DHHC-type containing 13 regulates fate specification of ectoderm and mesoderm cell lineages by modulating Smad6 activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells Dev (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/scd.2014.0068"}], "href": "https://doi.org/10.1089/scd.2014.0068"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24702307"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24702307"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Shaun S Sanders, Juan Hou, Liza M Sutton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Huntingtin interacting proteins 14 and 14-like are required for chorioallantoic fusion during early placental development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2014.11.018"}], "href": "https://doi.org/10.1016/j.ydbio.2014.11.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25478910"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25478910"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Kimon Lemonidis, Maria C Sanchez-Perez, Luke H Chamberlain "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a Novel Sequence Motif Recognized by the Ankyrin Repeat Domain of zDHHC17/13 S-Acyltransferases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.657668"}], "href": "https://doi.org/10.1074/jbc.M115.657668"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26198635"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26198635"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Carlos J Perez, Lars Mecklenburg, Jean Jaubert, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased Susceptibility to Skin Carcinogenesis Associated with a Spontaneous Mouse Mutation in the Palmitoyl Transferase Zdhhc13 Gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/jid.2015.314"}], "href": "https://doi.org/10.1038/jid.2015.314"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26288350"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26288350"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Li-Ying Chen, Hsin-Fang Yang-Yen, Chun-Chou Tsai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Protein Palmitoylation by ZDHHC13 Protects Skin against Microbial-Driven Dermatitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jid.2016.12.011"}], "href": "https://doi.org/10.1016/j.jid.2016.12.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28017833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28017833"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Eleonora Napoli, Gyu Song, Siming Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zdhhc13-dependent Drp1 S-palmitoylation impacts brain bioenergetics, anxiety, coordination and motor skills."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-12889-0"}], "href": "https://doi.org/10.1038/s41598-017-12889-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29038583"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29038583"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Li-Ying Chen, Kuo-Ray Lin, Yi-Ju Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Palmitoyl Acyltransferase Activity of ZDHHC13 Regulates Skin Barrier Development Partly by Controlling PADi3 and TGM1 Protein Stability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jid.2019.09.017"}], "href": "https://doi.org/10.1016/j.jid.2019.09.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31669413"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31669413"}]}]}]}
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| Synonyms | PMF1, PMF-1 |
| NCBI Gene ID | 100527963 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PMF1-BGLAP has 2,941 functional associations with biological entities spanning 8 categories (molecular profile, chemical, functional term, phrase or reference, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 49 datasets.
Click the + buttons to view associations for PMF1-BGLAP from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Achilles Cell Line Gene Essentiality Profiles | cell lines with fitness changed by PMF1-BGLAP gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of PMF1-BGLAP gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of PMF1-BGLAP gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with PMF1-BGLAP protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with PMF1-BGLAP gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PMF1-BGLAP gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of PMF1-BGLAP gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of PMF1-BGLAP gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI U2OS Cell Map Protein Localization Assemblies | assemblies containing PMF1-BGLAP protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing PMF1-BGLAP protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with PMF1-BGLAP protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of PMF1-BGLAP gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with PMF1-BGLAP gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with PMF1-BGLAP gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with PMF1-BGLAP gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PMF1-BGLAP gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of PMF1-BGLAP gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of PMF1-BGLAP gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving PMF1-BGLAP gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing PMF1-BGLAP protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by PMF1-BGLAP gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of PMF1-BGLAP gene from the GTEx eQTL 2025 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with PMF1-BGLAP gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of PMF1-BGLAP gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of PMF1-BGLAP gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PMF1-BGLAP gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for PMF1-BGLAP protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of PMF1-BGLAP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of PMF1-BGLAP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of PMF1-BGLAP gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of PMF1-BGLAP gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of PMF1-BGLAP gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with PMF1-BGLAP gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing PMF1-BGLAP protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain PMF1-BGLAP protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of PMF1-BGLAP gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of PMF1-BGLAP gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of PMF1-BGLAP gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of PMF1-BGLAP gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of PMF1-BGLAP gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of PMF1-BGLAP gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at PMF1-BGLAP gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of PMF1-BGLAP gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of PMF1-BGLAP gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of PMF1-BGLAP gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of PMF1-BGLAP gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of PMF1-BGLAP gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PMF1-BGLAP protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with PMF1-BGLAP protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |