| Name | POU class 2 homeobox associating factor 3 |
| Description | Enables DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent genome‐wide association studies have identified a susceptibility locus on chromosome 11q23.1 linked to colorectal cancer in European‐ancestry populations"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "and confirmed by large case–control series."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In parallel, investigations in Han Chinese cohorts have revealed associations of polymorphisms in this chromosomal region with CRC risk"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while high‐resolution mapping and expression studies have implicated co‐regulated genes—including COLCA1 and COLCA2—in modulating epithelial–immune interactions relevant to colon carcinogenesis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "as well as in autoimmune liver disease such as primary biliary cholangitis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMore recent functional analyses have revealed that COLCA2, which is also known as OCA-T2 or POU2AF3, serves as a transcriptional coactivator in a unique cell type—the tuft cell. Tuft cells are rare chemosensory cells that coordinate immune and neural responses in mucosal tissues. In these cells, POU2AF3 interacts with the master transcription factor POU2F3 and its paralogue OCA-T1 (also termed POU2AF2) through a conserved peptide that facilitates bivalent binding to an octamer DNA motif. This POU2F3–OCA-T complex is essential for establishing tuft cell identity and has been demonstrated to constitute a molecular vulnerability in tuft-cell-like small-cell lung cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Alan M Pittman, Emily Webb, Luis Carvajal-Carmona, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Refinement of the basis and impact of common 11q23.1 variation to the risk of developing colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddn267"}], "href": "https://doi.org/10.1093/hmg/ddn267"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18753146"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18753146"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jing He, Lynne R Wilkens, Daniel O Stram, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Generalizability and epidemiologic characterization of eleven colorectal cancer GWAS hits in multiple populations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Epidemiol Biomarkers Prev (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1055-9965.EPI-10-0892"}], "href": "https://doi.org/10.1158/1055-9965.EPI-10-0892"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21071539"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21071539"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xianglong Duan, Xiaolan Li, Huiling Lou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic association of PLCE1, C11orf92-C11orf93, and NOC3L with colorectal cancer risk in the Han population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Tumour Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13277-013-1242-9"}], "href": "https://doi.org/10.1007/s13277-013-1242-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24146276"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24146276"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Vanya D Peltekova, Mathieu Lemire, Aamer M Qazi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Cancer (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ijc.28557"}], "href": "https://doi.org/10.1002/ijc.28557"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24154973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24154973"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yuki Hitomi, Yoshihiro Aiba, Yosuke Kawai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "rs1944919 on chromosome 11q23.1 and its effector genes COLCA1/COLCA2 confer susceptibility to primary biliary cholangitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-84042-x"}], "href": "https://doi.org/10.1038/s41598-021-84042-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33633225"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33633225"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiaoli S Wu, Xue-Yan He, Jonathan J Ipsaro, et al. "}, {"type": "b", "children": [{"type": "t", "text": "OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41586-022-04842-7"}], "href": "https://doi.org/10.1038/s41586-022-04842-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35576971"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35576971"}]}]}]}
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| NCBI Gene ID | 120376 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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POU2AF3 has 806 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 18 datasets.
Click the + buttons to view associations for POU2AF3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of POU2AF3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with POU2AF3 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of POU2AF3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing POU2AF3 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with POU2AF3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing POU2AF3 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of POU2AF3 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of POU2AF3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of POU2AF3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with POU2AF3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by POU2AF3 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of POU2AF3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of POU2AF3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of POU2AF3 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of POU2AF3 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of POU2AF3 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of POU2AF3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with POU2AF3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |