| Name | PEAK1 related, kinase-activating pseudokinase 1 |
| Description | This gene encodes an enzyme that belongs to the tyrosine protein kinase family. A similar protein in rat binds to Rho family GTPase 2 (Rnd2) and regulates neurite outgrowth via activation of Ras homolog gene family, member A (RhoA). [provided by RefSeq, Mar 2014] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPragmin was first identified as a novel effector of the small GTPase Rnd2, predominantly expressed in neurons. In this context, Pragmin mediates Rnd2‐dependent activation of RhoA signaling, which in turn regulates actin cytoskeleton reorganization and neurite outgrowth, highlighting its role in neuronal morphology and differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSubsequent investigations revealed that Pragmin functions as a mammalian EPIYA effector. Tyrosine phosphorylation of its EPIYA motif by Src family kinases enables it to interact specifically with the C-terminal Src kinase (Csk). This interaction sequesters Csk in the cytoplasm, thereby preventing Csk-mediated inactivation of Src kinases. The consequent establishment of a positive feedback loop sustains Src kinase activity, which in turn promotes cell contraction, modifies focal adhesion dynamics, and ultimately impacts processes such as cell adhesion and motility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nStructural and functional studies have further characterized Pragmin as a pseudokinase scaffolding protein. Although its kinase domain adopts a classical protein‐kinase fold, it lacks catalytic activity; instead, its activity is exerted through the recruitment and regulation of other kinases such as Csk. Detailed crystallographic analyses have uncovered that Pragmin’s N- and C-terminal extensions mediate dimerization and higher-order oligomer formation, mechanisms that are critical for its ability to assemble multi-protein signaling complexes. Moreover, Pragmin forms both homotypic and heterotypic associations with related scaffolds (e.g. SgK269/PEAK1), delineating distinct signaling outputs that contribute to oncogenic pathways by modulating growth factor receptor signaling and promoting cell migration. Notably, aberrations in Pragmin-mediated signaling have been implicated in cancer progression, and genetic association studies have identified polymorphisms in the PRAG1 gene as risk factors in conditions such as IgA nephropathy."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hiroko Tanaka, Hironori Katoh, Manabu Negishi "}, {"type": "b", "children": [{"type": "t", "text": "Pragmin, a novel effector of Rnd2 GTPase, stimulates RhoA activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M511314200"}], "href": "https://doi.org/10.1074/jbc.M511314200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16481321"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16481321"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Fatemeh Safari, Naoko Murata-Kamiya, Yasuhiro Saito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian Pragmin regulates Src family kinases via the Glu-Pro-Ile-Tyr-Ala (EPIYA) motif that is exploited by bacterial effectors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1107740108"}], "href": "https://doi.org/10.1073/pnas.1107740108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21873224"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21873224"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yoshie Senda, Naoko Murata-Kamiya, Masanori Hatakeyama "}, {"type": "b", "children": [{"type": "t", "text": "C-terminal Src kinase-mediated EPIYA phosphorylation of Pragmin creates a feed-forward C-terminal Src kinase activation loop that promotes cell motility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.12962"}], "href": "https://doi.org/10.1111/cas.12962"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27116701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27116701"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Carole M Tactacan, Yu Wei Phua, Ling Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The pseudokinase SgK223 promotes invasion of pancreatic ductal epithelial cells through JAK1/Stat3 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-015-0412-3"}], "href": "https://doi.org/10.1186/s12943-015-0412-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26215634"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26215634"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Onisha Patel, Michael D W Griffin, Santosh Panjikar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure of SgK223 pseudokinase reveals novel mechanisms of homotypic and heterotypic association."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-017-01279-9"}], "href": "https://doi.org/10.1038/s41467-017-01279-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29079850"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29079850"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Céline Lecointre, Valérie Simon, Clément Kerneur, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dimerization of the Pragmin Pseudo-Kinase Regulates Protein Tyrosine Phosphorylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Structure (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.str.2018.01.017"}], "href": "https://doi.org/10.1016/j.str.2018.01.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29503074"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29503074"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Ling Liu, Yu Wei Phua, Rachel S Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M116.748897"}], "href": "https://doi.org/10.1074/jbc.M116.748897"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27531744"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27531744"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Fatemeh Safari, Nasim Shafiee Nejad, Azadeh Aghaei Nejad "}, {"type": "b", "children": [{"type": "t", "text": "The inhibition of Panc1 cancer cells invasion by hAMSCs secretome through suppression of tyrosine phosphorylation of SGK223 (at Y411 site), c-Src (at Y416, Y530 sites), AKT activity, and JAK1/Stat3 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12032-022-01649-4"}], "href": "https://doi.org/10.1007/s12032-022-01649-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35059869"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35059869"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Anastasiia A Buianova, Mariia V Proskura, Valery V Cheranev, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Candidate Genes for IgA Nephropathy in Pediatric Patients: Exome-Wide Association Study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms242115984"}], "href": "https://doi.org/10.3390/ijms242115984"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37958966"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37958966"}]}]}]}
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| NCBI Gene ID | 157285 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PRAG1 has 3,302 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 37 datasets.
Click the + buttons to view associations for PRAG1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of PRAG1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with PRAG1 protein from the CCLE Cell Line Proteomics dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of PRAG1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of PRAG1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| CM4AI U2OS Cell Map Protein Localization Assemblies | assemblies containing PRAG1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing PRAG1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing PRAG1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with PRAG1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of PRAG1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by PRAG1 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with PRAG1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with PRAG1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving PRAG1 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving PRAG1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing PRAG1 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing PRAG1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by PRAG1 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by PRAG1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of PRAG1 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of PRAG1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of PRAG1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with PRAG1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by PRAG1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of PRAG1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of PRAG1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by PRAG1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of PRAG1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of PRAG1 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Reactome Pathways 2024 | pathways involving PRAG1 protein from the Reactome Pathways 2024 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of PRAG1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of PRAG1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of PRAG1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of PRAG1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of PRAG1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PRAG1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of PRAG1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with PRAG1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |