| Name | PRDM4 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe published studies collectively highlight the central role of SUMO conjugation—a reversible posttranslational modification—in regulating key cellular processes such as embryogenesis, protein stability, transcriptional control, and stress responses. In particular, several reports demonstrate that SUMO1, SUMO2, and SUMO3 coordinate multiple signaling pathways in development and in response to cellular stress. However, none of these abstracts provide any evidence that directly links or describes a function for the long non‐coding RNA PRDM4‑AS1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies extend these findings by elaborating on SUMO-mediated regulation in stress and specialized cell responses—ranging from neuroprotective mechanisms following ischemia and modulation of immune cell function to the maintenance of chromatin and synaptic plasticity. They detail how distinct SUMO isoforms and their conjugating enzymes modulate substrate specificity and activity under dynamic cellular conditions. Still, none of these investigations mention or implicate PRDM4‑AS1 as a participant in these SUMO pathways or related posttranscriptional regulatory events."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional reports focus on SUMOylation in tissues such as the heart, kidney, and gonads, describing its contribution to apoptotic regulation, organogenesis, and the stress adaptation of cardiovascular and renal systems. Despite the breadth of these findings—and the clear involvement of SUMO pathways in many aspects of cell physiology and pathology—the function of PRDM4‑AS1 remains unaddressed by the current literature. Future research will be necessary to determine whether PRDM4‑AS1 might influence SUMO conjugation, modulate the expression or function of SUMO pathway components, or integrate into the myriad of cellular responses governed by SUMO modifications."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "12", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tianwei Li, Rasa Santockyte, Rong-Fong Shen, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Stress-induced inactivation of the c-Myb transcription factor through conjugation of SUMO-2/3 proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M609404200"}], "href": "https://doi.org/10.1074/jbc.M609404200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17077080"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17077080"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jianmei Zhu, Shanshan Zhu, Catherine M Guzzo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Small ubiquitin-related modifier (SUMO) binding determines substrate recognition and paralog-selective SUMO modification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M803632200"}], "href": "https://doi.org/10.1074/jbc.M803632200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18708356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18708356"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Mei-Ling Kuo, Willem den Besten, Mary C Thomas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Arf-induced turnover of the nucleolar nucleophosmin-associated SUMO-2/3 protease Senp3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/cc.7.21.6930"}], "href": "https://doi.org/10.4161/cc.7.21.6930"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18948745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18948745"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Evgenij Evdokimov, Prashant Sharma, Stephen J Lockett, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of SUMO1 in mice affects RanGAP1 localization and formation of PML nuclear bodies, but is not lethal as it can be compensated by SUMO2 or SUMO3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.038570"}], "href": "https://doi.org/10.1242/jcs.038570"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19033381"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19033381"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Li Zhu, Timothy J Doyle, Kwan Hee Kim "}, {"type": "b", "children": [{"type": "t", "text": "Retinoic acid modulates the subcellular localization of small ubiquitin-related modifier-2/3 (SUMO-2/3) in the testis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Androl (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2164/jandrol.109.008763"}], "href": "https://doi.org/10.2164/jandrol.109.008763"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20075418"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20075418"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Vibha Shrivastava, Marina Pekar, Eliana Grosser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SUMO proteins are involved in the stress response during spermatogenesis and are localized to DNA double-strand breaks in germ cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reproduction (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1530/REP-09-0492"}], "href": "https://doi.org/10.1530/REP-09-0492"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20385780"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20385780"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Eun Mi Kim, Han-Hyoung Lee, Sang-Hoon Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The mouse small ubiquitin-like modifier-2 (SUMO-2) inhibits interleukin-12 (IL-12) production in mature dendritic cells by blocking the translocation of the p65 subunit of NFκB into the nucleus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Immunol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molimm.2011.05.002"}], "href": "https://doi.org/10.1016/j.molimm.2011.05.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21632113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21632113"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Laura E McMillan, Jon T Brown, Jeremy M Henley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Profiles of SUMO and ubiquitin conjugation in an Alzheimer's disease model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurosci Lett (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neulet.2011.07.045"}], "href": "https://doi.org/10.1016/j.neulet.2011.07.045"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21843595"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21843595"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Anna Lena Datwyler, Gisela Lättig-Tünnemann, Wei Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SUMO2/3 conjugation is an endogenous neuroprotective mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cereb Blood Flow Metab (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/jcbfm.2011.112"}], "href": "https://doi.org/10.1038/jcbfm.2011.112"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21863037"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21863037"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Z Wang, R Wang, H Sheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transient ischemia induces massive nuclear accumulation of SUMO2/3-conjugated proteins in spinal cord neurons."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Spinal Cord (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sc.2012.100"}], "href": "https://doi.org/10.1038/sc.2012.100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22945749"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22945749"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Juraj Bies, Marek Sramko, Linda Wolff "}, {"type": "b", "children": [{"type": "t", "text": "Stress-induced phosphorylation of Thr486 in c-Myb by p38 mitogen-activated protein kinases attenuates conjugation of SUMO-2/3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M113.500264"}], "href": "https://doi.org/10.1074/jbc.M113.500264"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24257756"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24257756"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Liangli Wang, Ramona M Rodriguiz, William C Wetsel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuron-specific Sumo1-3 knockdown in mice impairs episodic and fear memories."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Psychiatry Neurosci (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1503/jpn.130148"}], "href": "https://doi.org/10.1503/jpn.130148"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24690371"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24690371"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Liangli Wang, Carolien Wansleeben, Shengli Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SUMO2 is essential while SUMO3 is dispensable for mouse embryonic development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Rep (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embr.201438534"}], "href": "https://doi.org/10.15252/embr.201438534"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24891386"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24891386"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Bettina Drisaldi, Luca Colnaghi, Luana Fioriti, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SUMO2 regulates vascular endothelial function and oxidative stress in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Heart Circ Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpheart.00530.2019"}], "href": "https://doi.org/10.1152/ajpheart.00530.2019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31584834"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31584834"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "H-M Ivy Yu, Trunee Hsu, Eri O Maruyama, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Rho-GTPase Activating Protein myosin MYO9A identified as a novel candidate gene for monogenic focal segmental glomerulosclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Kidney Int (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.kint.2020.12.022"}], "href": "https://doi.org/10.1016/j.kint.2020.12.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33412162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33412162"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Wei Zhao, Xiuying Zhang, Jia Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SUMOylation of Nuclear γ-Actin by SUMO2 supports DNA Damage Repair against Myocardial Ischemia-Reperfusion Injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijbs.74407"}], "href": "https://doi.org/10.7150/ijbs.74407"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35864967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35864967"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Wei Zhang, Feng Li, Jiahui Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aberrant SUMO2/3 modification of RUNX1 upon SENP1 inhibition is linked to the development of diabetic retinopathy in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Eye Res (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.exer.2023.109695"}], "href": "https://doi.org/10.1016/j.exer.2023.109695"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37890757"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37890757"}]}]}]}
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| NCBI Gene ID | 101929162 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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PRDM4-AS1 has 2 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.
Click the + buttons to view associations for PRDM4-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of PRDM4-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |